relax SVN archive

Merged revisions 18437 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18437 | bugman | 2013-02-07 16:49:20 +0100 (Thu, 07 Feb 2013) | 3 lines

Spacing fixes as identified by the Python 2to3 conversion program.
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Spacing fixes as identified by the Python 2to3 conversion program.

Modified the minimisation setup for the frame order analysis to better match the N-state model.

The N-state model code has been debugged a lot since it was copied and modified for the frame order
analysis, but those fixes have not been migrated to the frame order analysis. The fixes to
_minimise_setup_pcs() and _minimise_setup_rdcs() have now been migrated over. To help the data
checking, the _opt_uses_align_data(), _opt_uses_pcs() and _opt_uses_rdcs() methods have also been
ported over. Finally, a new check has been added to raise a RelaxError if no RDC or PCS data is
found.

In addition, the _minimise_setup_atomic_pos() has been created to decouple this from the PCS data
assembly (this also now matches the N-state model).

Merged revisions 18430,18432 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18430 | bugman | 2013-02-06 12:09:38 +0100 (Wed, 06 Feb 2013) | 5 lines

The relax program introduction now includes the revision number for subversion checked out copied.

This allows for better identification of the code base being used.
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r18432 | bugman | 2013-02-07 13:53:50 +0100 (Thu, 07 Feb 2013) | 6 lines

Fixes for the Pcs.test_structural_noise system test.

As this is based on random functions, sometimes, though rarely, the test fails. Now the simulation
accuracy has been increased and the tests are less rigorous.
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Fix for the CaM frame order system tests - the RDC and PCS data was not being loaded.

This bug comes from the previous commit.

Created the Frame_order.test_cam_free_rotor_missing_data system test.

This test is designed to check the frame order theory implementation when RDC or PDC data (either
single data points or entire data sets) are missing.

Fixes for the Pcs.test_structural_noise system test.

As this is based on random functions, sometimes, though rarely, the test fails. Now the simulation
accuracy has been increased and the tests are less rigorous.

Docstring edit.

The relax program introduction now includes the revision number for subversion checked out copied.

This allows for better identification of the code base being used.

Merged revisions 18425-18428 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18425 | bugman | 2013-02-05 12:35:30 +0100 (Tue, 05 Feb 2013) | 6 lines

Added skips for some GUI tests when wxPython version '2.9.4.1 gtk2 (classic)' is used.

There are a number of bugs in this version which cannot be worked around in certain GUI tests, so
they must be skipped.
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r18426 | bugman | 2013-02-05 12:56:36 +0100 (Tue, 05 Feb 2013) | 7 lines

More wxPython version '2.9.4.1 gtk2 (classic)' bug avoidances in the GUI tests.

Now the auto-analyses do not check the gauges in the relax controller at the end of the auto NOE,
Rx, and model-free analyses, as reading gauge values is faulty in this version. The Rx test is no
longer skipped for this wxPython version.
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r18427 | bugman | 2013-02-06 11:44:16 +0100 (Wed, 06 Feb 2013) | 6 lines

Improved the printout from the align_tensor.matrix_angles user function.

The relax_io.write_data() function is being used and the tensors are now identified by name rather
than index.
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r18428 | bugman | 2013-02-06 11:50:56 +0100 (Wed, 06 Feb 2013) | 3 lines

Improved the printouts from the align_tensor.svd user function.
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