relax SVN archive

Merged revisions 18028,18031-18032 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r18028 | bugman | 2012-11-23 16:34:37 +0100 (Fri, 23 Nov 2012) | 3 lines

The rdc.write and pcs.write user functions now skip deselected spins.
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r18031 | bugman | 2012-11-26 12:21:05 +0100 (Mon, 26 Nov 2012) | 6 lines

The axis for PDB geometric cone can now be turned off in the create_cone_pdb() function.

The axis_flag keyword argument is now accepted and if False will cause the axis to be excluded.
This is useful for the frame order cones for example as its own {x,y,z}-axis system is created.
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r18032 | bugman | 2012-11-26 12:24:45 +0100 (Mon, 26 Nov 2012) | 3 lines

Many docstring fixes for the functions of the generic_fns.structure.geometric module.
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Added symbolic links for all of the CaM frame order test models to the full_analysis.py script.

Added some comments showing what the angles are in radians.

This is for the CaM pseudo-ellipse frame order test data optimisation script.

The angles of the cone axis for the frame order eigenframe are now wrapped between 0 and 2pi.

This is needed for the numerical stability of the trigonometric functions, and for better
visualisation.

Updates to the FAQ webpage (http://www.nmr-relax.com/faq.html).

This includes an index at the top and a new section about the hidden radian unit with links to:

http://permalink.gmane.org/gmane.science.nmr.relax.user/723
http://marc.info/?l=relax-users&m=135070801026465&w=2
https://mail.gna.org/public/relax-users/2009-01/msg00000.html
http://www.mail-archive.com/relax-users@.../msg00582.html

for the hidden radian units in NMR, and:

http://permalink.gmane.org/gmane.science.nmr.relax.devel/1034
https://mail.gna.org/public/relax-devel/2007-06/msg00012.html
http://www.mail-archive.com/relax-devel@.../msg00975.html

for the application to Abragam's relaxation equations.

The frame order cones no longer have an axis.

The axis from the generic_fns.structure.geometric.create_cone_pdb() function was clashing with the
frame order eigenframe axes.

Merged revisions 18031-18032 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r18031 | bugman | 2012-11-26 12:21:05 +0100 (Mon, 26 Nov 2012) | 6 lines

The axis for PDB geometric cone can now be turned off in the create_cone_pdb() function.

The axis_flag keyword argument is now accepted and if False will cause the axis to be excluded.
This is useful for the frame order cones for example as its own {x,y,z}-axis system is created.
........
r18032 | bugman | 2012-11-26 12:24:45 +0100 (Mon, 26 Nov 2012) | 3 lines

Many docstring fixes for the functions of the generic_fns.structure.geometric module.
........

Many docstring fixes for the functions of the generic_fns.structure.geometric module.

The axis for PDB geometric cone can now be turned off in the create_cone_pdb() function.

The axis_flag keyword argument is now accepted and if False will cause the axis to be excluded.
This is useful for the frame order cones for example as its own {x,y,z}-axis system is created.

Merged revisions 18028 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r18028 | bugman | 2012-11-23 16:34:37 +0100 (Fri, 23 Nov 2012) | 3 lines

The rdc.write and pcs.write user functions now skip deselected spins.
........