relax SVN archive

Created the frame order analysis specific duplicate_data() method.

This allows the model_selection user function to operate on the frame order models.

Merged revisions 17968,17970-17976,17979-17982,17987,17994,17997 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r17968 | bugman | 2012-11-14 12:23:56 +0100 (Wed, 14 Nov 2012) | 6 lines

Bug fix for the grid_search user function.

The elements of the list of integers can be None to indicate that no grid search in that dimension
is to be performed.
........
r17970 | bugman | 2012-11-14 17:21:07 +0100 (Wed, 14 Nov 2012) | 5 lines

Created the N_state_model.test_data_copying system test for the rdc.copy and pcs.copy user functions.

These user functions do not exist yet, but this test will be used to implement them.
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r17971 | bugman | 2012-11-14 17:23:10 +0100 (Wed, 14 Nov 2012) | 5 lines

Reactivated the rdc.copy and pcs.copy user function front-ends.

The backends are missing, so relax is currently broken.
........
r17972 | bugman | 2012-11-14 17:34:23 +0100 (Wed, 14 Nov 2012) | 3 lines

Created the RelaxNoAlignError error class for use by rdc.copy and pcs.copy.
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r17973 | bugman | 2012-11-14 17:35:00 +0100 (Wed, 14 Nov 2012) | 3 lines

Fix for the RDC and PCS data copying system test script - the sequence is now also copied.
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r17974 | bugman | 2012-11-14 18:04:50 +0100 (Wed, 14 Nov 2012) | 3 lines

Created the RelaxAlignError error class for use by the rdc.copy and pcs.copy user functions.
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r17975 | bugman | 2012-11-14 18:05:52 +0100 (Wed, 14 Nov 2012) | 6 lines

Implemented the rdc.copy and pcs.copy user function backends.

This code is copied from the relax_data.copy user function and has been tailored to the different
data types.
........
r17976 | bugman | 2012-11-14 18:20:07 +0100 (Wed, 14 Nov 2012) | 3 lines

Fixes for the rdc.copy and pcs.copy backends.
........
r17979 | bugman | 2012-11-14 19:07:06 +0100 (Wed, 14 Nov 2012) | 5 lines

Modified the RDC and PCS data copying system test script to check overwriting.

The rdc.copy and pcs.copy user function should support the overwriting of existent values.
........
r17980 | bugman | 2012-11-15 09:17:20 +0100 (Thu, 15 Nov 2012) | 3 lines

The rdc.copy and pcs.copy user functions now support overwriting pre-existing data.
........
r17981 | bugman | 2012-11-15 09:27:09 +0100 (Thu, 15 Nov 2012) | 3 lines

Removed some debugging printouts.
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r17982 | bugman | 2012-11-15 09:27:40 +0100 (Thu, 15 Nov 2012) | 3 lines

The N_state_model.test_data_copying system test now checks the spin RDC and PCS data.
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r17987 | bugman | 2012-11-16 10:47:35 +0100 (Fri, 16 Nov 2012) | 5 lines

Fix for model elimination in the modsel.py model-free sample script.

The eliminate user function should be applied to each data pipe separately.
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r17994 | bugman | 2012-11-16 12:27:38 +0100 (Fri, 16 Nov 2012) | 5 lines

The model_selection user function is now using relax_io.write_data() for its printouts.

This allows for clean formatting when data pipes have long names.
........
r17997 | bugman | 2012-11-16 14:44:53 +0100 (Fri, 16 Nov 2012) | 3 lines

Fix for the relax_io.write_data() function - it can now handle no data being sent in.
........

Merged revisions 17968,17970-17976,17979-17982,17987,17994,17997 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r17968 | bugman | 2012-11-14 12:23:56 +0100 (Wed, 14 Nov 2012) | 6 lines

Bug fix for the grid_search user function.

The elements of the list of integers can be None to indicate that no grid search in that dimension
is to be performed.
........
r17970 | bugman | 2012-11-14 17:21:07 +0100 (Wed, 14 Nov 2012) | 5 lines

Created the N_state_model.test_data_copying system test for the rdc.copy and pcs.copy user functions.

These user functions do not exist yet, but this test will be used to implement them.
........
r17971 | bugman | 2012-11-14 17:23:10 +0100 (Wed, 14 Nov 2012) | 5 lines

Reactivated the rdc.copy and pcs.copy user function front-ends.

The backends are missing, so relax is currently broken.
........
r17972 | bugman | 2012-11-14 17:34:23 +0100 (Wed, 14 Nov 2012) | 3 lines

Created the RelaxNoAlignError error class for use by rdc.copy and pcs.copy.
........
r17973 | bugman | 2012-11-14 17:35:00 +0100 (Wed, 14 Nov 2012) | 3 lines

Fix for the RDC and PCS data copying system test script - the sequence is now also copied.
........
r17974 | bugman | 2012-11-14 18:04:50 +0100 (Wed, 14 Nov 2012) | 3 lines

Created the RelaxAlignError error class for use by the rdc.copy and pcs.copy user functions.
........
r17975 | bugman | 2012-11-14 18:05:52 +0100 (Wed, 14 Nov 2012) | 6 lines

Implemented the rdc.copy and pcs.copy user function backends.

This code is copied from the relax_data.copy user function and has been tailored to the different
data types.
........
r17976 | bugman | 2012-11-14 18:20:07 +0100 (Wed, 14 Nov 2012) | 3 lines

Fixes for the rdc.copy and pcs.copy backends.
........
r17979 | bugman | 2012-11-14 19:07:06 +0100 (Wed, 14 Nov 2012) | 5 lines

Modified the RDC and PCS data copying system test script to check overwriting.

The rdc.copy and pcs.copy user function should support the overwriting of existent values.
........
r17980 | bugman | 2012-11-15 09:17:20 +0100 (Thu, 15 Nov 2012) | 3 lines

The rdc.copy and pcs.copy user functions now support overwriting pre-existing data.
........
r17981 | bugman | 2012-11-15 09:27:09 +0100 (Thu, 15 Nov 2012) | 3 lines

Removed some debugging printouts.
........
r17982 | bugman | 2012-11-15 09:27:40 +0100 (Thu, 15 Nov 2012) | 3 lines

The N_state_model.test_data_copying system test now checks the spin RDC and PCS data.
........
r17987 | bugman | 2012-11-16 10:47:35 +0100 (Fri, 16 Nov 2012) | 5 lines

Fix for model elimination in the modsel.py model-free sample script.

The eliminate user function should be applied to each data pipe separately.
........
r17994 | bugman | 2012-11-16 12:27:38 +0100 (Fri, 16 Nov 2012) | 5 lines

The model_selection user function is now using relax_io.write_data() for its printouts.

This allows for clean formatting when data pipes have long names.
........
r17997 | bugman | 2012-11-16 14:44:53 +0100 (Fri, 16 Nov 2012) | 3 lines

Fix for the relax_io.write_data() function - it can now handle no data being sent in.
........

Merged revisions 17968,17970-17976,17979-17982,17987,17994,17997 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r17968 | bugman | 2012-11-14 12:23:56 +0100 (Wed, 14 Nov 2012) | 6 lines

Bug fix for the grid_search user function.

The elements of the list of integers can be None to indicate that no grid search in that dimension
is to be performed.
........
r17970 | bugman | 2012-11-14 17:21:07 +0100 (Wed, 14 Nov 2012) | 5 lines

Created the N_state_model.test_data_copying system test for the rdc.copy and pcs.copy user functions.

These user functions do not exist yet, but this test will be used to implement them.
........
r17971 | bugman | 2012-11-14 17:23:10 +0100 (Wed, 14 Nov 2012) | 5 lines

Reactivated the rdc.copy and pcs.copy user function front-ends.

The backends are missing, so relax is currently broken.
........
r17972 | bugman | 2012-11-14 17:34:23 +0100 (Wed, 14 Nov 2012) | 3 lines

Created the RelaxNoAlignError error class for use by rdc.copy and pcs.copy.
........
r17973 | bugman | 2012-11-14 17:35:00 +0100 (Wed, 14 Nov 2012) | 3 lines

Fix for the RDC and PCS data copying system test script - the sequence is now also copied.
........
r17974 | bugman | 2012-11-14 18:04:50 +0100 (Wed, 14 Nov 2012) | 3 lines

Created the RelaxAlignError error class for use by the rdc.copy and pcs.copy user functions.
........
r17975 | bugman | 2012-11-14 18:05:52 +0100 (Wed, 14 Nov 2012) | 6 lines

Implemented the rdc.copy and pcs.copy user function backends.

This code is copied from the relax_data.copy user function and has been tailored to the different
data types.
........
r17976 | bugman | 2012-11-14 18:20:07 +0100 (Wed, 14 Nov 2012) | 3 lines

Fixes for the rdc.copy and pcs.copy backends.
........
r17979 | bugman | 2012-11-14 19:07:06 +0100 (Wed, 14 Nov 2012) | 5 lines

Modified the RDC and PCS data copying system test script to check overwriting.

The rdc.copy and pcs.copy user function should support the overwriting of existent values.
........
r17980 | bugman | 2012-11-15 09:17:20 +0100 (Thu, 15 Nov 2012) | 3 lines

The rdc.copy and pcs.copy user functions now support overwriting pre-existing data.
........
r17981 | bugman | 2012-11-15 09:27:09 +0100 (Thu, 15 Nov 2012) | 3 lines

Removed some debugging printouts.
........
r17982 | bugman | 2012-11-15 09:27:40 +0100 (Thu, 15 Nov 2012) | 3 lines

The N_state_model.test_data_copying system test now checks the spin RDC and PCS data.
........
r17987 | bugman | 2012-11-16 10:47:35 +0100 (Fri, 16 Nov 2012) | 5 lines

Fix for model elimination in the modsel.py model-free sample script.

The eliminate user function should be applied to each data pipe separately.
........
r17994 | bugman | 2012-11-16 12:27:38 +0100 (Fri, 16 Nov 2012) | 5 lines

The model_selection user function is now using relax_io.write_data() for its printouts.

This allows for clean formatting when data pipes have long names.
........
r17997 | bugman | 2012-11-16 14:44:53 +0100 (Fri, 16 Nov 2012) | 3 lines

Fix for the relax_io.write_data() function - it can now handle no data being sent in.
........

Merged revisions 17997 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r17997 | bugman | 2012-11-16 14:44:53 +0100 (Fri, 16 Nov 2012) | 3 lines

Fix for the relax_io.write_data() function - it can now handle no data being sent in.
........

Fix for the relax_io.write_data() function - it can now handle no data being sent in.

Fixes for the model selection part of the frame order auto-analysis protocol.

Merged revisions 17994 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r17994 | bugman | 2012-11-16 12:27:38 +0100 (Fri, 16 Nov 2012) | 5 lines

The model_selection user function is now using relax_io.write_data() for its printouts.

This allows for clean formatting when data pipes have long names.
........

The model_selection user function is now using relax_io.write_data() for its printouts.

This allows for clean formatting when data pipes have long names.

Implemented the model_desc() and model_type() frame order specific methods.

These are needed for model selection.