relax SVN archive

Merged revisions 17856 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r17856 | bugman | 2012-10-16 13:57:37 +0200 (Tue, 16 Oct 2012) | 3 lines

PDB format fix for the atom numbers of zero - the atom number should be consecutive and unique.
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PDB format fix for the atom numbers of zero - the atom number should be consecutive and unique.

Converted the branch specific Frame order code to be Python 3 compatible.

The command used was:
2to3 -w specific_fns/frame_order.py

Fix for the now read-only tensor objects - the set() method is now used to store the parameter values.

Removed a debugging printout.

Fix for the align_tensor.init user function.

This change is needed as the tensor object is now completely read-only.

Python 3 update for the external Sobol library.

The command used was:
2to3 -w extern/sobol/*

The results were manually edited afterward to clean up some mess (print with double brackets, etc).

Python 3 fix - replaced all xrange() calls with range().

Python 3 fix for the structural API.

The command used was:
2to3 -w generic_fns/structure/api_base.py

Python 3 fixes for the Frame Order testing branch.

This includes print statement removal and updates of the all raise statement syntax.