relax SVN archive

PDB format fix for the atom numbers of zero - the atom number should be consecutive and unique.

Converted the branch specific Frame order code to be Python 3 compatible.

The command used was:
2to3 -w specific_fns/frame_order.py

Fix for the now read-only tensor objects - the set() method is now used to store the parameter values.

Removed a debugging printout.

Fix for the align_tensor.init user function.

This change is needed as the tensor object is now completely read-only.

Python 3 update for the external Sobol library.

The command used was:
2to3 -w extern/sobol/*

The results were manually edited afterward to clean up some mess (print with double brackets, etc).

Python 3 fix - replaced all xrange() calls with range().

Python 3 fix for the structural API.

The command used was:
2to3 -w generic_fns/structure/api_base.py

Python 3 fixes for the Frame Order testing branch.

This includes print statement removal and updates of the all raise statement syntax.

Merged revisions 17808,17812-17820 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r17808 | bugman | 2012-10-15 15:01:36 +0200 (Mon, 15 Oct 2012) | 3 lines

Added support for Python 2.2 and earlier for the compilation of the C modules.
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r17812 | bugman | 2012-10-15 15:27:08 +0200 (Mon, 15 Oct 2012) | 3 lines

Python 3 fix for the compat module - the Queue2 object needs to always be defined.
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r17813 | bugman | 2012-10-15 16:35:44 +0200 (Mon, 15 Oct 2012) | 6 lines

Bug fix for the unit test runner - this restores functionality broken all the way back at r12100.

The TEST_SUITE_ROOT constant no longer exists, so the check for it is now skipped. This allows
tests to be run directly be the script.
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r17814 | bugman | 2012-10-15 16:42:07 +0200 (Mon, 15 Oct 2012) | 5 lines

Python 2.3 and earlier fix for the unit test module for the float module.

The 'tests' class variable was renamed so that the test suite does not think that it is a unit test.
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r17815 | bugman | 2012-10-15 17:14:26 +0200 (Mon, 15 Oct 2012) | 3 lines

The GUI is now cleanly exited with a call to wx.App.ExitMainLoop rather than wx.Exit.
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r17816 | bugman | 2012-10-15 17:24:36 +0200 (Mon, 15 Oct 2012) | 3 lines

Even cleaner exiting of the GUI - the interpreter thread is terminated by the exit_gui() method.
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r17817 | bugman | 2012-10-15 18:16:37 +0200 (Mon, 15 Oct 2012) | 5 lines

The text relax controller log is no longer cleared when a reset occurs.

This allows the test suite results to still be presented in GUI mode.
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r17818 | bugman | 2012-10-15 18:29:47 +0200 (Mon, 15 Oct 2012) | 10 lines

Big fixes for the running of the GUI tests.

The GUI initialisation and termination, when not running in GUI mode, is now preformed outside of
the Python unittest framework. The GUI was previously initalised in the setUp() method for all GUI
tests, but for some reason this caused abrupt terminations of the GUI_test_runner.run() method.
This run method, when finished, would not return to the Test_suite_runner but would cause the Python
interpreter to silently die. The result was that the test suite summary would appear not to be
printed out.
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r17819 | bugman | 2012-10-15 18:36:40 +0200 (Mon, 15 Oct 2012) | 3 lines

The test suite can now run again when wxPython is missing (bug from the last commit).
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r17820 | bugman | 2012-10-16 09:56:37 +0200 (Tue, 16 Oct 2012) | 3 lines

Better formatting of the test suite summary.
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