relax SVN archive

Merged revisions 17295,17332,17337-17359 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r17295 | bugman | 2012-07-23 15:44:47 +0200 (Mon, 23 Jul 2012) | 3 lines

Alphabetical ordering of the imports.
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r17332 | bugman | 2012-08-15 16:38:48 +0200 (Wed, 15 Aug 2012) | 7 lines

Redesign of how the GPL license is presented to the user.

The old prompt.gpl module with the version 2 of the license has been deleted. Now the text form the
docs/COPYING file is passed through pydoc.pager for the './relax --licence' and the prompt mode GPL
object, and is simply printed to STDOUT for the GUI help system.
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r17337 | bugman | 2012-08-27 11:05:17 +0200 (Mon, 27 Aug 2012) | 5 lines

Rewrote the relaxation curve-fitting chapter of the relax manual.

This chapter was quite out of date and was of no use to modern relax versions!
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r17338 | bugman | 2012-08-27 11:09:07 +0200 (Mon, 27 Aug 2012) | 3 lines

Small fix for the sample script in the NOE chapter of the relax manual.
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r17339 | bugman | 2012-08-27 11:11:23 +0200 (Mon, 27 Aug 2012) | 3 lines

Small fix for the sample script in the relaxation curve-fitting chapter of the relax manual.
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r17340 | bugman | 2012-08-27 11:43:17 +0200 (Mon, 27 Aug 2012) | 6 lines

The fetch_docstrings.py now adds LaTeX labels to each user function section.

This has the form of 'uf: ' followed by the user function name, and is for referencing purposes
within the main text.
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r17341 | bugman | 2012-08-27 11:55:55 +0200 (Mon, 27 Aug 2012) | 3 lines

Added screenshots of Xmgrace displaying relaxation curves.
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r17342 | bugman | 2012-08-27 11:58:38 +0200 (Mon, 27 Aug 2012) | 5 lines

Improvements to the final section of the relaxation curve-fitting chapter.

The Xmgrace screenshot and page references for the user functions have been added.
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r17343 | bugman | 2012-08-27 12:06:44 +0200 (Mon, 27 Aug 2012) | 3 lines

Small fix for the model-free chapter of the relax manual.
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r17344 | bugman | 2012-08-27 12:25:29 +0200 (Mon, 27 Aug 2012) | 5 lines

Modified the graphics.fetch_icon function to return different file formats.

This will be used for the relax manual where eps.gz files are required.
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r17345 | bugman | 2012-08-27 16:32:14 +0200 (Mon, 27 Aug 2012) | 6 lines

Large expansion of the Oxygen icons within relax.

All 128x128 versions of the icons used by the user functions have been added as both PNG and gzipped
EPS files. A number of gzipped SVG icons has been added as well.
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r17346 | bugman | 2012-08-27 16:35:03 +0200 (Mon, 27 Aug 2012) | 6 lines

Large expansion of the relax icon set.

All 128x128 versions of the icons used by the user functions have been added as both PNG and gzipped
EPS files. A few gzipped SVG and non-sized icons have been added as well.
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r17347 | bugman | 2012-08-27 19:10:54 +0200 (Mon, 27 Aug 2012) | 9 lines

Redesigned the formatting of the user function chapter of the relax manual.

The fetch_docstrings.py now forces each user function to start in a new column. This increases the
size of the manual, but makes the reading of the user function documentation much easier. The user
function class and function icons (128x128 format) are now placed between the top bar and the
subsection title and are left and right justified. This prettification simply allows the user
functions to be more quickly identified.
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r17348 | bugman | 2012-08-27 19:59:38 +0200 (Mon, 27 Aug 2012) | 3 lines

Removed some now useless whitespace from the top of each user function subsection of the manual.
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r17349 | bugman | 2012-08-28 14:01:17 +0200 (Tue, 28 Aug 2012) | 3 lines

Created EPS versions of a number of wizard graphics for use in the user manual.
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r17350 | bugman | 2012-08-28 14:21:35 +0200 (Tue, 28 Aug 2012) | 3 lines

Updated the screenshot of the pipe editor window.
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r17351 | bugman | 2012-08-28 14:50:55 +0200 (Tue, 28 Aug 2012) | 3 lines

Updates to the generic_fns.mol_res_spin.id_string_doc documentation structure.
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r17352 | bugman | 2012-08-28 14:51:57 +0200 (Tue, 28 Aug 2012) | 5 lines

The user manual now specifies the repository revision if a non-tagged version is built.

This enables easier tracking and editing of the manual.
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r17353 | bugman | 2012-08-28 14:52:30 +0200 (Tue, 28 Aug 2012) | 3 lines

Updates and small expansion of the intro chapter of the relax user manual.
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r17354 | bugman | 2012-08-28 15:20:27 +0200 (Tue, 28 Aug 2012) | 3 lines

Converted some more wizard graphics to the EPS format for the user manual.
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r17355 | bugman | 2012-08-28 15:23:43 +0200 (Tue, 28 Aug 2012) | 3 lines

Fix for the pipe editor window screenshot width in the relax manual.
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r17356 | bugman | 2012-08-28 15:32:04 +0200 (Tue, 28 Aug 2012) | 3 lines

Created a new chapter for the relax user manual titled 'The relax data model'.
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r17357 | bugman | 2012-08-28 15:32:31 +0200 (Tue, 28 Aug 2012) | 3 lines

Added some more abbreviations to the relax user manual.
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r17358 | bugman | 2012-08-28 15:59:16 +0200 (Tue, 28 Aug 2012) | 3 lines

Added the Morin and Gagne 2009 reference for the consistency testing.
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r17359 | bugman | 2012-08-28 16:03:18 +0200 (Tue, 28 Aug 2012) | 5 lines

Improvements to the 'Supported NMR theories' section of the user manual introduction.

This includes the addition of the Morin and Gagne 2009 reference!!!
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Merged revisions 17812-17820 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r17812 | bugman | 2012-10-15 15:27:08 +0200 (Mon, 15 Oct 2012) | 3 lines

Python 3 fix for the compat module - the Queue2 object needs to always be defined.
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r17813 | bugman | 2012-10-15 16:35:44 +0200 (Mon, 15 Oct 2012) | 6 lines

Bug fix for the unit test runner - this restores functionality broken all the way back at r12100.

The TEST_SUITE_ROOT constant no longer exists, so the check for it is now skipped. This allows
tests to be run directly be the script.
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r17814 | bugman | 2012-10-15 16:42:07 +0200 (Mon, 15 Oct 2012) | 5 lines

Python 2.3 and earlier fix for the unit test module for the float module.

The 'tests' class variable was renamed so that the test suite does not think that it is a unit test.
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r17815 | bugman | 2012-10-15 17:14:26 +0200 (Mon, 15 Oct 2012) | 3 lines

The GUI is now cleanly exited with a call to wx.App.ExitMainLoop rather than wx.Exit.
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r17816 | bugman | 2012-10-15 17:24:36 +0200 (Mon, 15 Oct 2012) | 3 lines

Even cleaner exiting of the GUI - the interpreter thread is terminated by the exit_gui() method.
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r17817 | bugman | 2012-10-15 18:16:37 +0200 (Mon, 15 Oct 2012) | 5 lines

The text relax controller log is no longer cleared when a reset occurs.

This allows the test suite results to still be presented in GUI mode.
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r17818 | bugman | 2012-10-15 18:29:47 +0200 (Mon, 15 Oct 2012) | 10 lines

Big fixes for the running of the GUI tests.

The GUI initialisation and termination, when not running in GUI mode, is now preformed outside of
the Python unittest framework. The GUI was previously initalised in the setUp() method for all GUI
tests, but for some reason this caused abrupt terminations of the GUI_test_runner.run() method.
This run method, when finished, would not return to the Test_suite_runner but would cause the Python
interpreter to silently die. The result was that the test suite summary would appear not to be
printed out.
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r17819 | bugman | 2012-10-15 18:36:40 +0200 (Mon, 15 Oct 2012) | 3 lines

The test suite can now run again when wxPython is missing (bug from the last commit).
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r17820 | bugman | 2012-10-16 09:56:37 +0200 (Tue, 16 Oct 2012) | 3 lines

Better formatting of the test suite summary.
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Merged revisions 17812-17820 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

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r17812 | bugman | 2012-10-15 15:27:08 +0200 (Mon, 15 Oct 2012) | 3 lines

Python 3 fix for the compat module - the Queue2 object needs to always be defined.
........
r17813 | bugman | 2012-10-15 16:35:44 +0200 (Mon, 15 Oct 2012) | 6 lines

Bug fix for the unit test runner - this restores functionality broken all the way back at r12100.

The TEST_SUITE_ROOT constant no longer exists, so the check for it is now skipped. This allows
tests to be run directly be the script.
........
r17814 | bugman | 2012-10-15 16:42:07 +0200 (Mon, 15 Oct 2012) | 5 lines

Python 2.3 and earlier fix for the unit test module for the float module.

The 'tests' class variable was renamed so that the test suite does not think that it is a unit test.
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r17815 | bugman | 2012-10-15 17:14:26 +0200 (Mon, 15 Oct 2012) | 3 lines

The GUI is now cleanly exited with a call to wx.App.ExitMainLoop rather than wx.Exit.
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r17816 | bugman | 2012-10-15 17:24:36 +0200 (Mon, 15 Oct 2012) | 3 lines

Even cleaner exiting of the GUI - the interpreter thread is terminated by the exit_gui() method.
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r17817 | bugman | 2012-10-15 18:16:37 +0200 (Mon, 15 Oct 2012) | 5 lines

The text relax controller log is no longer cleared when a reset occurs.

This allows the test suite results to still be presented in GUI mode.
........
r17818 | bugman | 2012-10-15 18:29:47 +0200 (Mon, 15 Oct 2012) | 10 lines

Big fixes for the running of the GUI tests.

The GUI initialisation and termination, when not running in GUI mode, is now preformed outside of
the Python unittest framework. The GUI was previously initalised in the setUp() method for all GUI
tests, but for some reason this caused abrupt terminations of the GUI_test_runner.run() method.
This run method, when finished, would not return to the Test_suite_runner but would cause the Python
interpreter to silently die. The result was that the test suite summary would appear not to be
printed out.
........
r17819 | bugman | 2012-10-15 18:36:40 +0200 (Mon, 15 Oct 2012) | 3 lines

The test suite can now run again when wxPython is missing (bug from the last commit).
........
r17820 | bugman | 2012-10-16 09:56:37 +0200 (Tue, 16 Oct 2012) | 3 lines

Better formatting of the test suite summary.
........

Merged revisions 17812-17820 via svnmerge from
svn+ssh://bugman@.../svn/relax/trunk

........
r17812 | bugman | 2012-10-15 15:27:08 +0200 (Mon, 15 Oct 2012) | 3 lines

Python 3 fix for the compat module - the Queue2 object needs to always be defined.
........
r17813 | bugman | 2012-10-15 16:35:44 +0200 (Mon, 15 Oct 2012) | 6 lines

Bug fix for the unit test runner - this restores functionality broken all the way back at r12100.

The TEST_SUITE_ROOT constant no longer exists, so the check for it is now skipped. This allows
tests to be run directly be the script.
........
r17814 | bugman | 2012-10-15 16:42:07 +0200 (Mon, 15 Oct 2012) | 5 lines

Python 2.3 and earlier fix for the unit test module for the float module.

The 'tests' class variable was renamed so that the test suite does not think that it is a unit test.
........
r17815 | bugman | 2012-10-15 17:14:26 +0200 (Mon, 15 Oct 2012) | 3 lines

The GUI is now cleanly exited with a call to wx.App.ExitMainLoop rather than wx.Exit.
........
r17816 | bugman | 2012-10-15 17:24:36 +0200 (Mon, 15 Oct 2012) | 3 lines

Even cleaner exiting of the GUI - the interpreter thread is terminated by the exit_gui() method.
........
r17817 | bugman | 2012-10-15 18:16:37 +0200 (Mon, 15 Oct 2012) | 5 lines

The text relax controller log is no longer cleared when a reset occurs.

This allows the test suite results to still be presented in GUI mode.
........
r17818 | bugman | 2012-10-15 18:29:47 +0200 (Mon, 15 Oct 2012) | 10 lines

Big fixes for the running of the GUI tests.

The GUI initialisation and termination, when not running in GUI mode, is now preformed outside of
the Python unittest framework. The GUI was previously initalised in the setUp() method for all GUI
tests, but for some reason this caused abrupt terminations of the GUI_test_runner.run() method.
This run method, when finished, would not return to the Test_suite_runner but would cause the Python
interpreter to silently die. The result was that the test suite summary would appear not to be
printed out.
........
r17819 | bugman | 2012-10-15 18:36:40 +0200 (Mon, 15 Oct 2012) | 3 lines

The test suite can now run again when wxPython is missing (bug from the last commit).
........
r17820 | bugman | 2012-10-16 09:56:37 +0200 (Tue, 16 Oct 2012) | 3 lines

Better formatting of the test suite summary.
........

Better formatting of the test suite summary.

The test suite can now run again when wxPython is missing (bug from the last commit).

Big fixes for the running of the GUI tests.

The GUI initialisation and termination, when not running in GUI mode, is now preformed outside of
the Python unittest framework. The GUI was previously initalised in the setUp() method for all GUI
tests, but for some reason this caused abrupt terminations of the GUI_test_runner.run() method.
This run method, when finished, would not return to the Test_suite_runner but would cause the Python
interpreter to silently die. The result was that the test suite summary would appear not to be
printed out.

The text relax controller log is no longer cleared when a reset occurs.

This allows the test suite results to still be presented in GUI mode.

Even cleaner exiting of the GUI - the interpreter thread is terminated by the exit_gui() method.

The GUI is now cleanly exited with a call to wx.App.ExitMainLoop rather than wx.Exit.