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[r16930] by bugman

The relax_data.dipole_pair backend now uses the direct_bond flag.

2012-06-18 09:45:51 Tree
[r16929] by bugman

Added CONECT records to the sphere.pdb file to allow connectivities to be more easily determined.

This is for the internal reader, as the current algorithm for finding attached atoms is distance
based, and as all N atoms of all residues are at [0, 0, 0], this algorithm fails.

2012-06-18 09:14:59 Tree
[r16928] by bugman

Implemented the are_bonded() structural API method for the internal structural object.

2012-06-18 09:06:35 Tree
[r16927] by bugman

Created the structural API base are_bonded() method - this is for determining if 2 atoms are bonded.

This is a method stub which raises a RelaxImplementError.

2012-06-18 07:50:31 Tree
[r16926] by bugman

Started to add the backend of the relax_data.dipole_pair user function.

2012-06-17 22:12:09 Tree
[r16925] by bugman

A few changes to the relax_data.dipole_pair user function definition.

2012-06-17 21:22:09 Tree
[r16924] by bugman

Shifted the dipole-dipole graphics to the Wizard directory, as this is a wizard graphic.

2012-06-17 20:37:57 Tree
[r16923] by bugman

Created graphics for the magnetic dipole-dipole interaction.

2012-06-17 20:37:23 Tree
[r16922] by bugman

Removed the bond length from the model-free parameter list.

2012-06-17 11:54:24 Tree
[r16921] by bugman

The bond length setting via value.set has no been merged into relax_data.dipole_pair.

This averaged length is dipole-dipole distance and does not need to be a model-free parameter.

2012-06-17 11:54:03 Tree
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