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Converted the align_tensor.init user function to accept the align_id and domain arguments.

The domain argument complements the align_tensor.set_domain user function whereas the align_id arg
is new and is used to associate a tensor with an alignment. This is part of a redesign of how
alignment tensors are handled, as there can be multiple tensors per alignment if the molecule is
multi-domain.

bugman 2011-12-07

changed /branches/frame_order_testing/generic_fns/align_tensor.py
changed /branches/frame_order_testing/prompt/align_tensor.py
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