relax SVN archive

Maybe found a way to switch from one equation to the other.

This approach, not general, uses the number of parameters as a
test to the use of either the 2-parameter equation 'exp_2param_neg' or
the 3-parameter equation 'exp_3param_inv_neg'...

It is not clear if it works, but, at least, the code compiles...

Made the code for disassembling the parameter vector more general.

Before, there was an explicit statement of the "inv" equation.
Now, the code is more general and "inv" became "exp_3param_inv_neg",
one of the many 3-parameter equations...

Changed fitted values of the first spin from values to None.

This is because this spin is in the list of deselected spins.

Added a join() wrapper method for the GUI interpreter thread internal queue.

Added the empty() method to the GUI interpreter thread to determine if the internal queue is empty.

Added a switch in the C code for curve fitting.

The switch will allow the use of specific equations depending on
the model chosen.

However, it is still not functional... :(

Added tests values for the fitting of data from the second spin.

This second spin was added in revision 14451.

Added "sigma_I" and "var_I" values.

The values were the ones output from relax (assuming it is right.)

Merged revisions 14428-14429,14431,14433,14436-14442,14446-14447 via svnmerge from
svn+ssh://semor@.../svn/relax/1.3

........
r14428 | bugman | 2011-08-25 11:41:18 +0200 (Thu, 25 Aug 2011) | 5 lines

Deleted the STDOUT and STDERR capture mess in MF_minimise_command!

This was a horrible design breaking both the GUI and the test suite!!!
........
r14429 | bugman | 2011-08-25 11:42:03 +0200 (Thu, 25 Aug 2011) | 5 lines

The uni-processor call to capture_stdio() has been removed.

No IO redirection will be performed in uni-processor mode.
........
r14431 | bugman | 2011-08-25 11:49:34 +0200 (Thu, 25 Aug 2011) | 6 lines

Removed the IO redirection from the uni-processor return_object() method.

IO redirection in the 'multi' package is a bad, bad idea and destroys all IO redirection any Python
program is attempting to do.
........
r14433 | bugman | 2011-08-25 11:55:56 +0200 (Thu, 25 Aug 2011) | 6 lines

Eliminated the restore_stdio() method from the multi package.

The redirection of IO streams is totally incompatible with an IO redirection performed by the
underlying Python program.
........
r14436 | bugman | 2011-08-25 12:12:25 +0200 (Thu, 25 Aug 2011) | 5 lines

Fix for the RelaxError system - the status singleton was not being imported.

This was a result of a faulty merger of the gui_testing branch.
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r14437 | bugman | 2011-08-25 12:13:07 +0200 (Thu, 25 Aug 2011) | 5 lines

Removed the _sys_exit module variable from the mpi4py processor.

This is unnecessary.
........
r14438 | bugman | 2011-08-25 12:18:40 +0200 (Thu, 25 Aug 2011) | 3 lines

Removed a pile of unused code from the mpi4py processor module.
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r14439 | bugman | 2011-08-25 12:19:59 +0200 (Thu, 25 Aug 2011) | 6 lines

Reverted r14438 as the code actually was used.

The command used was:
svn merge -r14438:14437 .
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r14440 | bugman | 2011-08-25 12:22:17 +0200 (Thu, 25 Aug 2011) | 3 lines

Some cleaning up of the mpi4py processor module.
........
r14441 | bugman | 2011-08-25 12:24:18 +0200 (Thu, 25 Aug 2011) | 6 lines

Reverted r14437 as _sys_exit is necessary for the mpi4py processor module.

The command used was:
svn merge -r14437:14436 .
........
r14442 | bugman | 2011-08-25 12:26:31 +0200 (Thu, 25 Aug 2011) | 3 lines

Fix for the pymol.write user function - the file name can be set to None!
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r14446 | bugman | 2011-08-25 12:53:45 +0200 (Thu, 25 Aug 2011) | 3 lines

Fix for the GUI test mode - the mode variable should be a class variable.
........
r14447 | bugman | 2011-08-25 12:55:11 +0200 (Thu, 25 Aug 2011) | 5 lines

Some more fixes for the 'mode' class variable.

These problems were due to the multi-processor code merger.
........

Merged revisions 14428-14429,14431,14433,14436-14442,14446-14447 via svnmerge from
svn+ssh://semor@.../svn/relax/1.3

........
r14428 | bugman | 2011-08-25 11:41:18 +0200 (Thu, 25 Aug 2011) | 5 lines

Deleted the STDOUT and STDERR capture mess in MF_minimise_command!

This was a horrible design breaking both the GUI and the test suite!!!
........
r14429 | bugman | 2011-08-25 11:42:03 +0200 (Thu, 25 Aug 2011) | 5 lines

The uni-processor call to capture_stdio() has been removed.

No IO redirection will be performed in uni-processor mode.
........
r14431 | bugman | 2011-08-25 11:49:34 +0200 (Thu, 25 Aug 2011) | 6 lines

Removed the IO redirection from the uni-processor return_object() method.

IO redirection in the 'multi' package is a bad, bad idea and destroys all IO redirection any Python
program is attempting to do.
........
r14433 | bugman | 2011-08-25 11:55:56 +0200 (Thu, 25 Aug 2011) | 6 lines

Eliminated the restore_stdio() method from the multi package.

The redirection of IO streams is totally incompatible with an IO redirection performed by the
underlying Python program.
........
r14436 | bugman | 2011-08-25 12:12:25 +0200 (Thu, 25 Aug 2011) | 5 lines

Fix for the RelaxError system - the status singleton was not being imported.

This was a result of a faulty merger of the gui_testing branch.
........
r14437 | bugman | 2011-08-25 12:13:07 +0200 (Thu, 25 Aug 2011) | 5 lines

Removed the _sys_exit module variable from the mpi4py processor.

This is unnecessary.
........
r14438 | bugman | 2011-08-25 12:18:40 +0200 (Thu, 25 Aug 2011) | 3 lines

Removed a pile of unused code from the mpi4py processor module.
........
r14439 | bugman | 2011-08-25 12:19:59 +0200 (Thu, 25 Aug 2011) | 6 lines

Reverted r14438 as the code actually was used.

The command used was:
svn merge -r14438:14437 .
........
r14440 | bugman | 2011-08-25 12:22:17 +0200 (Thu, 25 Aug 2011) | 3 lines

Some cleaning up of the mpi4py processor module.
........
r14441 | bugman | 2011-08-25 12:24:18 +0200 (Thu, 25 Aug 2011) | 6 lines

Reverted r14437 as _sys_exit is necessary for the mpi4py processor module.

The command used was:
svn merge -r14437:14436 .
........
r14442 | bugman | 2011-08-25 12:26:31 +0200 (Thu, 25 Aug 2011) | 3 lines

Fix for the pymol.write user function - the file name can be set to None!
........
r14446 | bugman | 2011-08-25 12:53:45 +0200 (Thu, 25 Aug 2011) | 3 lines

Fix for the GUI test mode - the mode variable should be a class variable.
........
r14447 | bugman | 2011-08-25 12:55:11 +0200 (Thu, 25 Aug 2011) | 5 lines

Some more fixes for the 'mode' class variable.

These problems were due to the multi-processor code merger.
........