relax SVN archive

generic_fns.sequence.validate_sequence() now also checks for the spin ID, data and error columns.

This is now used by relax_io.read_spin_data().

Merged revisions 13951,13956,13958,13961,13983-13984,14008-14009,14011,14013 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r13951 | bugman | 2011-07-28 15:14:55 +0200 (Thu, 28 Jul 2011) | 7 lines

Redesign of the main relax module.

The module has been renamed to 'relax.py', and the original file 'relax' is now a very basic python
script which simply loads the module and runs the new start() function for launching relax. The MS
Windows BAT file has also been updated to feed the module into python.
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r13956 | bugman | 2011-07-28 16:26:16 +0200 (Thu, 28 Jul 2011) | 3 lines

The relax mode normally specified by the command line can now be overridden.
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r13958 | bugman | 2011-07-28 16:35:58 +0200 (Thu, 28 Jul 2011) | 3 lines

Removed the executable svn property on the info module.
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r13961 | bugman | 2011-07-28 16:53:26 +0200 (Thu, 28 Jul 2011) | 3 lines

Fix for the overriding of the command line specified mode - the args must be processed anyway.
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r13983 | bugman | 2011-07-29 09:59:57 +0200 (Fri, 29 Jul 2011) | 3 lines

Created a basic system test checking the reading of a non-PDB file by structure.read_pdb.
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r13984 | bugman | 2011-07-29 10:06:14 +0200 (Fri, 29 Jul 2011) | 5 lines

Fix for structure.read_pdb for when the file contains no PDB data.

This is now caught, and a warning is given and the function exists cleanly.
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r14008 | bugman | 2011-07-29 18:36:30 +0200 (Fri, 29 Jul 2011) | 3 lines

Shifted the pedantic flag into the status object.
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r14009 | bugman | 2011-07-29 18:37:15 +0200 (Fri, 29 Jul 2011) | 3 lines

RelaxWarnings now only show a traceback when the pedantic flag is True.
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r14011 | bugman | 2011-07-29 19:01:35 +0200 (Fri, 29 Jul 2011) | 5 lines

The relax state is now saved on a RelaxError when the pedantic rather than debugging flag is turned on.

As both flags can be given, this allows for this state saving to be activated or deactivated.
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r14013 | bugman | 2011-07-29 19:08:13 +0200 (Fri, 29 Jul 2011) | 3 lines

The relax_io.read_spin_data() function no longer skips short lines so that a warning is given for it.
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Reverted r14068 as this svnmerge commit breaks the branch.

The command used was:
svn merge -r14068:14067 .

Merged revisions 13951,13956,13958,13961,13983-13984,14008-14009,14011,14013 via svnmerge from
svn+ssh://han87@.../svn/relax/1.3

........
r13951 | bugman | 2011-07-28 15:14:55 +0200 (Thu, 28 Jul 2011) | 7 lines

Redesign of the main relax module.

The module has been renamed to 'relax.py', and the original file 'relax' is now a very basic python
script which simply loads the module and runs the new start() function for launching relax. The MS
Windows BAT file has also been updated to feed the module into python.
........
r13956 | bugman | 2011-07-28 16:26:16 +0200 (Thu, 28 Jul 2011) | 3 lines

The relax mode normally specified by the command line can now be overridden.
........
r13958 | bugman | 2011-07-28 16:35:58 +0200 (Thu, 28 Jul 2011) | 3 lines

Removed the executable svn property on the info module.
........
r13961 | bugman | 2011-07-28 16:53:26 +0200 (Thu, 28 Jul 2011) | 3 lines

Fix for the overriding of the command line specified mode - the args must be processed anyway.
........
r13983 | bugman | 2011-07-29 09:59:57 +0200 (Fri, 29 Jul 2011) | 3 lines

Created a basic system test checking the reading of a non-PDB file by structure.read_pdb.
........
r13984 | bugman | 2011-07-29 10:06:14 +0200 (Fri, 29 Jul 2011) | 5 lines

Fix for structure.read_pdb for when the file contains no PDB data.

This is now caught, and a warning is given and the function exists cleanly.
........
r14008 | bugman | 2011-07-29 18:36:30 +0200 (Fri, 29 Jul 2011) | 3 lines

Shifted the pedantic flag into the status object.
........
r14009 | bugman | 2011-07-29 18:37:15 +0200 (Fri, 29 Jul 2011) | 3 lines

RelaxWarnings now only show a traceback when the pedantic flag is True.
........
r14011 | bugman | 2011-07-29 19:01:35 +0200 (Fri, 29 Jul 2011) | 5 lines

The relax state is now saved on a RelaxError when the pedantic rather than debugging flag is turned on.

As both flags can be given, this allows for this state saving to be activated or deactivated.
........
r14013 | bugman | 2011-07-29 19:08:13 +0200 (Fri, 29 Jul 2011) | 3 lines

The relax_io.read_spin_data() function no longer skips short lines so that a warning is given for it.
........

Reverted r14039 as the third time of svnmerge initialisation was performed.

The command used was:
svn merge -r14039:14038 .

The third time of svnmerge initialisation causes problems as indicated in email: https://mail.gna.org/public/relax-devel/2011-08/msg00014.html and https://mail.gna.org/public/relax-devel/2011-08/msg00015.html.

Fix for the assemble_data() method of the NOE auto-analysis - the number of spectra can be less than 3.

Fix for the gui_to_float() for when an integer is given.

This is now converted to a float.

The gui_raise() function now only shows the dialog if the status.show_gui flag is set.

Shifted the exception_queue object into the base of the status object.

The spectrum.error_analysis can now be repetitively performed.

This allows changes such as addition of new spectra to occur.