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Merge the changes from the 1.3 line to xyz branch

Several changes to the 1.3 lines were made by Edward d'Auvergne to fix many problems in xyz branch, as indicated in the emails:https://mail.gna.org/public/relax-devel/2011-07/msg00033.html and https://mail.gna.org/public/relax-devel/2011-07/msg00028.html. These changes are now included in the xyz branch.

han87 2011-07-28

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copied /1.3/graphics/oxygen_icons/16x16/actions/document-close.png -> /branches/xyz/graphics/oxygen_icons/16x16/actions/document-close.png
copied /1.3/graphics/oxygen_icons/16x16/actions/document-open-folder.png -> /branches/xyz/graphics/oxygen_icons/16x16/actions/document-open-folder.png
copied /1.3/graphics/oxygen_icons/22x22/actions/document-close.png -> /branches/xyz/graphics/oxygen_icons/22x22/actions/document-close.png
copied /1.3/graphics/oxygen_icons/22x22/actions/document-new.png -> /branches/xyz/graphics/oxygen_icons/22x22/actions/document-new.png
copied /1.3/graphics/oxygen_icons/22x22/actions/document-open-folder.png -> /branches/xyz/graphics/oxygen_icons/22x22/actions/document-open-folder.png
copied /1.3/graphics/oxygen_icons/32x32/actions/document-close.png -> /branches/xyz/graphics/oxygen_icons/32x32/actions/document-close.png
copied /1.3/graphics/oxygen_icons/32x32/actions/document-new.png -> /branches/xyz/graphics/oxygen_icons/32x32/actions/document-new.png
copied /1.3/graphics/oxygen_icons/32x32/actions/document-open-folder.png -> /branches/xyz/graphics/oxygen_icons/32x32/actions/document-open-folder.png
copied /1.3/graphics/oxygen_icons/48x48/actions/document-close.png -> /branches/xyz/graphics/oxygen_icons/48x48/actions/document-close.png
copied /1.3/graphics/oxygen_icons/48x48/actions/document-new.png -> /branches/xyz/graphics/oxygen_icons/48x48/actions/document-new.png
copied /1.3/graphics/oxygen_icons/48x48/actions/document-open-folder.png -> /branches/xyz/graphics/oxygen_icons/48x48/actions/document-open-folder.png
changed /branches/xyz
changed /branches/xyz/auto_analyses/dauvergne_protocol.py
changed /branches/xyz/auto_analyses/noe.py
changed /branches/xyz/data/__init__.py
changed /branches/xyz/generic_fns/mol_res_spin.py
changed /branches/xyz/generic_fns/pcs.py
changed /branches/xyz/generic_fns/pipes.py
changed /branches/xyz/generic_fns/relax_data.py
changed /branches/xyz/generic_fns/sequence.py
changed /branches/xyz/generic_fns/spectrum.py
changed /branches/xyz/generic_fns/structure/geometric.py
changed /branches/xyz/generic_fns/structure/internal.py
changed /branches/xyz/generic_fns/structure/main.py
changed /branches/xyz/generic_fns/value.py
/branches/xyz
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