relax SVN archive

Expanded the docs for the relax_data.read user function to include the Varian and Bruker frq params.

The proton frequency element has been renamed in the relax_data.read GUI user function.

Merged revisions 13845-13857 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

........
r13845 | bugman | 2011-07-25 10:07:31 +0200 (Mon, 25 Jul 2011) | 5 lines

Added some old 2004 scripts for creating a uniform vector distribution and calculating relaxation data.

This will be used in the end to build a quick test for the dauvergne_protocol auto-analysis.
........
r13846 | bugman | 2011-07-25 10:13:27 +0200 (Mon, 25 Jul 2011) | 3 lines

Modified the spherical vector distribution script in preparation for Python 3.
........
r13847 | bugman | 2011-07-25 10:15:19 +0200 (Mon, 25 Jul 2011) | 3 lines

Modified the script to only have 3 incs.
........
r13848 | bugman | 2011-07-25 10:15:51 +0200 (Mon, 25 Jul 2011) | 3 lines

Created the PDB representation of the spherical vector distribution for 9 vectors.
........
r13849 | bugman | 2011-07-25 10:37:49 +0200 (Mon, 25 Jul 2011) | 3 lines

Converted the relaxation data generation script from relax 1.0 format to relax 1.3.
........
r13850 | bugman | 2011-07-25 12:02:17 +0200 (Mon, 25 Jul 2011) | 9 lines

Added initial support for determining protein connectivities in the internal structural reader.

This is currently only for intra-residue connectivities in the protein backbone. A number of new
methods have been added:
_mol_type()
_protein_connect()
_protein_intra_connect()
........
r13851 | bugman | 2011-07-25 12:20:43 +0200 (Mon, 25 Jul 2011) | 5 lines

Fixes for the test suite relaxation data creation script.

The code was not fully compatible with the relax 1.3 design.
........
r13852 | bugman | 2011-07-25 12:21:13 +0200 (Mon, 25 Jul 2011) | 3 lines

Fixes to the relaxation data generation sample script based on the changes of r13851.
........
r13853 | bugman | 2011-07-25 12:22:22 +0200 (Mon, 25 Jul 2011) | 5 lines

The relaxation data is now for 500 and 900 MHz.

This larger difference should hopefully speed up optimisation in the test suite.
........
r13854 | bugman | 2011-07-25 12:23:36 +0200 (Mon, 25 Jul 2011) | 3 lines

Added the relaxation data.
........
r13855 | bugman | 2011-07-25 13:45:04 +0200 (Mon, 25 Jul 2011) | 5 lines

Added the argument 'bc' to the relax_data.write() user function front end.

This currently doesn't do anything.
........
r13856 | bugman | 2011-07-25 14:33:28 +0200 (Mon, 25 Jul 2011) | 5 lines

The 'bc' arg is now part of the value.write() user function, and all of the return_value functions.

The arg is also propagated to the back-end of the relax_data.write() user function.
........
r13857 | bugman | 2011-07-25 14:34:12 +0200 (Mon, 25 Jul 2011) | 3 lines

The back calculated data is now written out to file in the synthetic relaxation data script.
........

The back calculated data is now written out to file in the synthetic relaxation data script.

The 'bc' arg is now part of the value.write() user function, and all of the return_value functions.

The arg is also propagated to the back-end of the relax_data.write() user function.

Added the argument 'bc' to the relax_data.write() user function front end.

This currently doesn't do anything.

Added the relaxation data.

The relaxation data is now for 500 and 900 MHz.

This larger difference should hopefully speed up optimisation in the test suite.

Fixes to the relaxation data generation sample script based on the changes of r13851.

Fixes for the test suite relaxation data creation script.

The code was not fully compatible with the relax 1.3 design.