svn+ssh://bugman@.../svn/relax/branches/bmrb
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r8153 | bugman | 2008-12-05 20:44:46 +0100 (Fri, 05 Dec 2008) | 3 lines
Import fix!
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r8369 | bugman | 2009-01-11 10:52:13 +0100 (Sun, 11 Jan 2009) | 11 lines
Added a directory for packaging the pystarlib STAR format reader/writer library with relax.
The pystarlib project by Jurgen F. Doreleijers (jurgenfd att gmail dot com) is located at
http://code.google.com/p/pystarlib/.
This packaging with relax is temporary until relax can fully use the library to read and write STAR
files containing relaxation analysis results (model-free for now) for submission to the BMRB. The
pystarlib library also needs to be packaged with distutils for easy installation, prior to
reseparation.
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r8370 | bugman | 2009-01-11 10:55:33 +0100 (Sun, 11 Jan 2009) | 6 lines
Added all the pystarlib code.
The original SVN repository path for this code is http://pystarlib.googlecode.com/svn/trunk/src/STAR
and the code was copied at r15.
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r8371 | bugman | 2009-01-11 12:20:07 +0100 (Sun, 11 Jan 2009) | 3 lines
Created a system test for the writing and reading of a BRMB STAR formatted file.
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r8372 | bugman | 2009-01-11 12:26:41 +0100 (Sun, 11 Jan 2009) | 3 lines
A few fixes for the BMRB system test.
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r8373 | bugman | 2009-01-11 13:50:12 +0100 (Sun, 11 Jan 2009) | 3 lines
Added a missing import.
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r8374 | bugman | 2009-01-11 13:54:24 +0100 (Sun, 11 Jan 2009) | 3 lines
Some more missing imports.
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r8375 | bugman | 2009-01-11 13:57:26 +0100 (Sun, 11 Jan 2009) | 3 lines
A RelaxError is now raised if the specific_fns BMRB methods do not exist.
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r8376 | bugman | 2009-01-11 14:01:28 +0100 (Sun, 11 Jan 2009) | 3 lines
Added a stub bmrb_write() model-free method.
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r8377 | bugman | 2009-01-11 14:03:58 +0100 (Sun, 11 Jan 2009) | 3 lines
The bmrb_write() method is now in the model-free specific object.
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r8378 | bugman | 2009-01-11 14:05:52 +0100 (Sun, 11 Jan 2009) | 3 lines
Activated the specific bmrb_write() methods.
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r8379 | bugman | 2009-01-11 14:06:26 +0100 (Sun, 11 Jan 2009) | 3 lines
Activated the specific bmrb_read() methods.
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r8380 | bugman | 2009-01-11 15:46:03 +0100 (Sun, 11 Jan 2009) | 5 lines
Import fixes for pystarlib, as they were all screwed up.
This allows the unit test framework to function and allows importing of the code into relax.
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r8381 | bugman | 2009-01-11 15:57:41 +0100 (Sun, 11 Jan 2009) | 5 lines
Removed the BMRB STAR file compression abilities from the user functions.
The pystarlib does not support this.
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r8382 | bugman | 2009-01-11 16:28:13 +0100 (Sun, 11 Jan 2009) | 5 lines
Redesigned the generic BMRB write() function for the pystarlib.File.File class object.
The open_write_file() function should not be used as pystarlib already creates the file.
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r8383 | bugman | 2009-01-11 16:30:33 +0100 (Sun, 11 Jan 2009) | 3 lines
Added a printout for the write() function.
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r8384 | bugman | 2009-01-11 16:41:13 +0100 (Sun, 11 Jan 2009) | 5 lines
The pystarlib File object is now initialised and the write() method called.
This produces a relatively empty file.
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r8385 | bugman | 2009-01-11 17:17:49 +0100 (Sun, 11 Jan 2009) | 5 lines
Fix for the test_rw_bmrb_model_free() system test.
The dir name was being set to the data pipe name!
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r8386 | bugman | 2009-01-11 17:27:34 +0100 (Sun, 11 Jan 2009) | 3 lines
Fixes for the read() function.
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r8387 | bugman | 2009-01-11 17:29:45 +0100 (Sun, 11 Jan 2009) | 3 lines
Fix for the write() function. The directory for placing the file into is now created.
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r8388 | bugman | 2009-01-11 17:33:47 +0100 (Sun, 11 Jan 2009) | 6 lines
Wrote a basic model-free bmrb_read() method.
This simply parses the STAR formatted file, but does not yet put the contents into the relax data
store.
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