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Merged revisions 12550-12552,12554-12563,12566 via svnmerge from

svn+ssh://bugman@.../svn/relax/1.3

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r12550 | bugman | 2011-02-18 11:31:46 +0100 (Fri, 18 Feb 2011) | 3 lines

Initialized merge tracking via "svnmerge" with revisions "1-11635" from
svn+ssh://bugman@.../svn/relax/branches/bruker_import
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r12551 | bugman | 2011-02-18 11:33:18 +0100 (Fri, 18 Feb 2011) | 79 lines

Merged revisions 11636-11637,12535-12547,12549 via svnmerge from
svn+ssh://bugman@.../svn/relax/branches/bruker_import

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r11636 | michaelbieri | 2010-10-11 00:25:46 +0200 (Mon, 11 Oct 2010) | 2 lines

Example outputfiles of BRUKER Protein Dynamic Center (PDC) were added.
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r11637 | michaelbieri | 2010-10-11 03:42:10 +0200 (Mon, 11 Oct 2010) | 4 lines

Function to import BRUKER Protein Dynamic Center project is added.

The import will be converted to a relax formatted parameter file, either as a dummy file or saved at a specified location.
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r12535 | bugman | 2011-02-17 16:14:49 +0100 (Thu, 17 Feb 2011) | 7 lines

Updated the PDC R1 data file to version 1.1.5.

This file was sent by Klaus-Peter Neidig <peter dot neidig att bruker-biospin dot de> in the message
https://mail.gna.org/public/relax-devel/2011-01/msg00043.html (Message-id:
<4D3ED3AC.20107@...>).
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r12536 | bugman | 2011-02-17 16:22:15 +0100 (Thu, 17 Feb 2011) | 3 lines

Created the prompt/script interface to the pdc.read() user function.
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r12537 | bugman | 2011-02-17 16:25:56 +0100 (Thu, 17 Feb 2011) | 3 lines

Create a stub of a back-end for the pdc.read() user function.
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r12538 | bugman | 2011-02-17 16:42:14 +0100 (Thu, 17 Feb 2011) | 3 lines

Added a sequence file for the data in these test PDC files.
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r12539 | bugman | 2011-02-17 16:59:31 +0100 (Thu, 17 Feb 2011) | 3 lines

Added a basic system test for the loading of a PDC file.
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r12540 | bugman | 2011-02-17 17:00:44 +0100 (Thu, 17 Feb 2011) | 3 lines

Added some missing imports.
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r12541 | bugman | 2011-02-17 17:01:25 +0100 (Thu, 17 Feb 2011) | 3 lines

Typo fix for the PDC reading system test.
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r12542 | bugman | 2011-02-17 17:30:24 +0100 (Thu, 17 Feb 2011) | 3 lines

Implemented the reading of relaxation data from the PDC file.
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r12543 | bugman | 2011-02-17 17:31:45 +0100 (Thu, 17 Feb 2011) | 3 lines

The PDC system test has been loosened - the precision is not perfect.
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r12544 | bugman | 2011-02-17 17:34:53 +0100 (Thu, 17 Feb 2011) | 3 lines

Added some checks for the current data pipe relaxation data structures to the PDC reading system test.
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r12545 | bugman | 2011-02-18 10:23:00 +0100 (Fri, 18 Feb 2011) | 3 lines

The temperature from the PDC file is now being read, although it isn't used yet.
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r12546 | bugman | 2011-02-18 10:23:37 +0100 (Fri, 18 Feb 2011) | 3 lines

The 'Labelling' line from the PDC file is now used to set the heteronucleus type and spin name.
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r12547 | bugman | 2011-02-18 10:41:25 +0100 (Fri, 18 Feb 2011) | 5 lines

Implemented the code for reading the peak intensity type.

This is not active yet as it can only be used in the BMRB branch.
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r12549 | bugman | 2011-02-18 11:25:45 +0100 (Fri, 18 Feb 2011) | 5 lines

Fix for the integration method block in the pdc.read() back end.

The commented out code requires at least some code in the block.
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r12552 | bugman | 2011-02-18 11:35:40 +0100 (Fri, 18 Feb 2011) | 3 lines

Removed merge tracking for "svnmerge" for
svn+ssh://bugman@.../svn/relax/branches/bruker_import
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r12554 | bugman | 2011-02-18 12:41:55 +0100 (Fri, 18 Feb 2011) | 3 lines

Added some data files and scripts for checking the consistency of the PDC data verse relax's data.
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r12555 | bugman | 2011-02-18 12:45:09 +0100 (Fri, 18 Feb 2011) | 3 lines

Some cosmetic changes to the PDC data conversion test script.
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r12556 | bugman | 2011-02-18 14:20:06 +0100 (Fri, 18 Feb 2011) | 3 lines

Added a relax script and R1 data file for relax's optimisation and MC sims using the PDC file errors.
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r12557 | bugman | 2011-02-18 14:24:01 +0100 (Fri, 18 Feb 2011) | 3 lines

Created the peak height error file errors_R1.txt from testT1.txt.
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r12558 | bugman | 2011-02-18 14:24:52 +0100 (Fri, 18 Feb 2011) | 3 lines

Added residue name and number info to the print out of the convert_data.py PDC file script.
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r12559 | bugman | 2011-02-18 14:32:10 +0100 (Fri, 18 Feb 2011) | 3 lines

Added a script for converting the PDC NOE data into Python lists.
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r12560 | bugman | 2011-02-18 14:37:50 +0100 (Fri, 18 Feb 2011) | 3 lines

Added a system test for the reading of a PDC NOE file.
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r12561 | bugman | 2011-02-18 14:49:43 +0100 (Fri, 18 Feb 2011) | 3 lines

Fix for the NOE PDC data conversion script.
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r12562 | bugman | 2011-02-18 14:50:37 +0100 (Fri, 18 Feb 2011) | 5 lines

Fix for the test_pdc_read_noe() PDC file reading system test.

The NOE values were actually the errors.
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r12563 | bugman | 2011-02-18 14:51:49 +0100 (Fri, 18 Feb 2011) | 3 lines

Some fixes for the pdc.read() back end so that PDC NOE data files can be read properly.
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r12566 | bugman | 2011-02-18 15:19:21 +0100 (Fri, 18 Feb 2011) | 13 lines

Merged the changes to the CHANGES file from the 1.3.10 tag.

The command used was:
svn merge -r12564:12565 svn+ssh://bugman@.../svn/relax/tags/1.3.10

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r12565 | bugman | 2011-02-18 15:18:06 +0100 (Fri, 18 Feb 2011) | 3 lines
Changed paths:
M /tags/1.3.10/docs/CHANGES

Updated the CHANGES file for relax version 1.3.10 (see http://www.nmr-relax.com/download.html).
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bugman 2011-02-18

copied /1.3/generic_fns/pdc.py -> /branches/cst/generic_fns/pdc.py
copied /1.3/prompt/pdc.py -> /branches/cst/prompt/pdc.py
copied /1.3/test_suite/shared_data/pdc_files -> /branches/cst/test_suite/shared_data/pdc_files
copied /1.3/test_suite/system_tests/pdc.py -> /branches/cst/test_suite/system_tests/pdc.py
changed /branches/cst
changed /branches/cst/docs/CHANGES
changed /branches/cst/generic_fns/__init__.py
changed /branches/cst/generic_fns/spectrum.py
changed /branches/cst/prompt/__init__.py
changed /branches/cst/prompt/interpreter.py
changed /branches/cst/test_suite/system_tests/__init__.py
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