relax SVN archive

Fix for the execution locking when an auto-analysis is launched from a script.

The lock is not released and a new one acquired. Instead the mechanism is script, just as it is
for nested scripting.

Bug fix - the script path is now being removed from sys.path.

This was causing incorrect scripts to be loaded if exec_script() is run multiple times.

Modification of the execution lock debugging print outs.

More informative nesting information in the execution lock debugging.

Fix for running scripts - the '.' character is now disallowed as module import cannot work.

Renamed all the frame order scripts so that they have valid module names and can be imported.

Removed all execfile() calls by switching to the script() user function.

This is for security and for handling the execution locking mechanism properly.

Deletion of the peak_list_handling branch - it is now merged back into the main 1.3 line.

Removed merge tracking for "svnmerge" for
svn+ssh://bugman@.../svn/relax/branches/peak_list_handling

Merged revisions 11815-11816,11819,11832-11835,11847,11850-11853 via svnmerge from
svn+ssh://bugman@.../svn/relax/branches/peak_list_handling

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r11815 | bugman | 2010-12-14 17:51:09 +0100 (Tue, 14 Dec 2010) | 3 lines

Modified the bug_17276 system test data so that there is some noise simulated.
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r11816 | bugman | 2010-12-14 17:52:06 +0100 (Tue, 14 Dec 2010) | 3 lines

Peak intensity data is now stored as a dictionary with the spectrum_id arg as keys.
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r11819 | bugman | 2010-12-14 19:02:59 +0100 (Tue, 14 Dec 2010) | 5 lines

Fix for the Relax_fit.test_read_sparky system test.

This was solely a problem within the test and its data.
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r11832 | bugman | 2010-12-15 12:17:28 +0100 (Wed, 15 Dec 2010) | 3 lines

Switched __errors_repl() to use dictionaries rather than lists.
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r11833 | bugman | 2010-12-15 18:33:22 +0100 (Wed, 15 Dec 2010) | 3 lines

Converted the specific relaxation curve fitting code to use the dictionary data structures.
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r11834 | bugman | 2010-12-15 18:33:44 +0100 (Wed, 15 Dec 2010) | 3 lines

The Monte Carlo simulation code can now handle dictionary type data.
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r11835 | bugman | 2010-12-15 18:51:02 +0100 (Wed, 15 Dec 2010) | 3 lines

The Grace code can now handle dictionary type data.
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r11847 | bugman | 2010-12-17 10:03:04 +0100 (Fri, 17 Dec 2010) | 3 lines

Fixes for the system tests - the data is now in dictionaries.
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r11850 | bugman | 2010-12-17 10:48:25 +0100 (Fri, 17 Dec 2010) | 3 lines

Redesigned the specific API common method _return_value_general() to handle dictionaries.
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r11851 | bugman | 2010-12-17 11:12:52 +0100 (Fri, 17 Dec 2010) | 3 lines

Fix for the API base method _return_value_general() - not all values have errors associated with them.
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r11852 | bugman | 2010-12-17 11:43:27 +0100 (Fri, 17 Dec 2010) | 3 lines

The NOE specific analysis now uses the dictionary type structure for the intensity data structures.
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r11853 | bugman | 2010-12-17 11:44:35 +0100 (Fri, 17 Dec 2010) | 6 lines

The list-type data can also be a numpy array, so the Monte Carlo code can now handle this.

Previously the data was being converted from an ndarray to a list, but now this is explicitly
handled.
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