relax SVN archive

This is a new branch to create the import function of Bruker Protein Dynamic Center projects.

Merged revisions 11631 via svnmerge from
svn+ssh://michaelbieri@.../svn/relax/1.3

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r11631 | bugman | 2010-10-07 03:52:13 +1100 (Don, 07 Okt 2010) | 3 lines

Missing import of __main__.
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Bug fix for the BMRB system tests.

The file paths were incorrect.

Merged revisions 11631 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r11631 | bugman | 2010-10-06 18:52:13 +0200 (Wed, 06 Oct 2010) | 3 lines

Missing import of __main__.
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Missing import of __main__.

Merged revisions 11552,11565,11567,11571-11572,11574,11587-11588,11591,11594,11597,11607,11609,11618,11627-11628 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r11552 | bugman | 2010-09-14 16:34:11 +0200 (Tue, 14 Sep 2010) | 3 lines

Created a directory for relax graphics. The first files here are the relax logo and icons.
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r11565 | bugman | 2010-09-15 19:36:15 +0200 (Wed, 15 Sep 2010) | 3 lines

The Ref.cite_html() method can now handle missing data.
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r11567 | bugman | 2010-09-15 19:43:22 +0200 (Wed, 15 Sep 2010) | 3 lines

Ref.cite_html() no longer adds the DOI web address in front of normal web links!
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r11571 | bugman | 2010-09-16 09:59:26 +0200 (Thu, 16 Sep 2010) | 3 lines

Initialised the reference for the relax GUI paper.
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r11572 | bugman | 2010-09-16 10:00:23 +0200 (Thu, 16 Sep 2010) | 3 lines

Fix for the Bieri et al. ref.
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r11574 | bugman | 2010-09-16 10:06:47 +0200 (Thu, 16 Sep 2010) | 3 lines

Citations now include the status if not 'published'.
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r11587 | bugman | 2010-09-16 18:20:20 +0200 (Thu, 16 Sep 2010) | 3 lines

Renamed the results_folder arg to results_dir in the NOE auto-analysis, and rearranged the args.
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r11588 | bugman | 2010-09-16 18:22:30 +0200 (Thu, 16 Sep 2010) | 5 lines

Added a system test for the dauvergne_protocol auto-analysis code.

The test is not yet functional.
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r11591 | bugman | 2010-09-16 19:17:33 +0200 (Thu, 16 Sep 2010) | 6 lines

Modified the specific code API to remove a number of references to spin_id.

Some analysis types do not work on spins, so the spin_id args are being replaced by data_id to
identify the data requested. For most methods, this will be the spin_id.
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r11594 | bugman | 2010-09-17 10:06:20 +0200 (Fri, 17 Sep 2010) | 3 lines

Shifted the debug and pedantic flags into the __main__ namespace for better access from other modules.
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r11597 | bugman | 2010-09-17 10:30:22 +0200 (Fri, 17 Sep 2010) | 3 lines

Some fixes for the NOE auto-analysis.
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r11607 | bugman | 2010-09-17 15:57:10 +0200 (Fri, 17 Sep 2010) | 3 lines

Fix for the NOE auto-analysis - the spins are now named to the value of the 'heteronuc' arg.
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r11609 | bugman | 2010-09-17 18:02:20 +0200 (Fri, 17 Sep 2010) | 5 lines

Shifted the NOE specific analysis code into its own package.

This is in preparation for splitting up the module and adding new modules.
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r11618 | bugman | 2010-09-29 15:26:50 +0200 (Wed, 29 Sep 2010) | 3 lines

Added a catch for no data in the error analysis by replicated spectra.
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r11627 | bugman | 2010-10-06 12:46:39 +0200 (Wed, 06 Oct 2010) | 3 lines

Added some checks to the dauvergne_protocol mf analysis for the required previously optimised results.
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r11628 | bugman | 2010-10-06 12:47:20 +0200 (Wed, 06 Oct 2010) | 3 lines

pipe.delete() without args will now delete all data pipes.
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Merged revisions 11627-11628 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r11627 | bugman | 2010-10-06 12:46:39 +0200 (Wed, 06 Oct 2010) | 3 lines

Added some checks to the dauvergne_protocol mf analysis for the required previously optimised results.
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r11628 | bugman | 2010-10-06 12:47:20 +0200 (Wed, 06 Oct 2010) | 3 lines

pipe.delete() without args will now delete all data pipes.
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pipe.delete() without args will now delete all data pipes.

Added some checks to the dauvergne_protocol mf analysis for the required previously optimised results.

Bug fix for the maximum number of iterations in the model-free GUI frame.

This was not being respected as it was being sent into dauvernge_protocol as a string, not and int.