relax SVN archive

Merged revisions 11552,11565,11567,11571-11572,11574,11587-11588,11591,11594,11597,11607,11609,11618,11627-11628 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r11552 | bugman | 2010-09-14 16:34:11 +0200 (Tue, 14 Sep 2010) | 3 lines

Created a directory for relax graphics. The first files here are the relax logo and icons.
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r11565 | bugman | 2010-09-15 19:36:15 +0200 (Wed, 15 Sep 2010) | 3 lines

The Ref.cite_html() method can now handle missing data.
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r11567 | bugman | 2010-09-15 19:43:22 +0200 (Wed, 15 Sep 2010) | 3 lines

Ref.cite_html() no longer adds the DOI web address in front of normal web links!
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r11571 | bugman | 2010-09-16 09:59:26 +0200 (Thu, 16 Sep 2010) | 3 lines

Initialised the reference for the relax GUI paper.
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r11572 | bugman | 2010-09-16 10:00:23 +0200 (Thu, 16 Sep 2010) | 3 lines

Fix for the Bieri et al. ref.
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r11574 | bugman | 2010-09-16 10:06:47 +0200 (Thu, 16 Sep 2010) | 3 lines

Citations now include the status if not 'published'.
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r11587 | bugman | 2010-09-16 18:20:20 +0200 (Thu, 16 Sep 2010) | 3 lines

Renamed the results_folder arg to results_dir in the NOE auto-analysis, and rearranged the args.
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r11588 | bugman | 2010-09-16 18:22:30 +0200 (Thu, 16 Sep 2010) | 5 lines

Added a system test for the dauvergne_protocol auto-analysis code.

The test is not yet functional.
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r11591 | bugman | 2010-09-16 19:17:33 +0200 (Thu, 16 Sep 2010) | 6 lines

Modified the specific code API to remove a number of references to spin_id.

Some analysis types do not work on spins, so the spin_id args are being replaced by data_id to
identify the data requested. For most methods, this will be the spin_id.
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r11594 | bugman | 2010-09-17 10:06:20 +0200 (Fri, 17 Sep 2010) | 3 lines

Shifted the debug and pedantic flags into the __main__ namespace for better access from other modules.
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r11597 | bugman | 2010-09-17 10:30:22 +0200 (Fri, 17 Sep 2010) | 3 lines

Some fixes for the NOE auto-analysis.
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r11607 | bugman | 2010-09-17 15:57:10 +0200 (Fri, 17 Sep 2010) | 3 lines

Fix for the NOE auto-analysis - the spins are now named to the value of the 'heteronuc' arg.
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r11609 | bugman | 2010-09-17 18:02:20 +0200 (Fri, 17 Sep 2010) | 5 lines

Shifted the NOE specific analysis code into its own package.

This is in preparation for splitting up the module and adding new modules.
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r11618 | bugman | 2010-09-29 15:26:50 +0200 (Wed, 29 Sep 2010) | 3 lines

Added a catch for no data in the error analysis by replicated spectra.
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r11627 | bugman | 2010-10-06 12:46:39 +0200 (Wed, 06 Oct 2010) | 3 lines

Added some checks to the dauvergne_protocol mf analysis for the required previously optimised results.
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r11628 | bugman | 2010-10-06 12:47:20 +0200 (Wed, 06 Oct 2010) | 3 lines

pipe.delete() without args will now delete all data pipes.
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Merged revisions 11627-11628 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r11627 | bugman | 2010-10-06 12:46:39 +0200 (Wed, 06 Oct 2010) | 3 lines

Added some checks to the dauvergne_protocol mf analysis for the required previously optimised results.
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r11628 | bugman | 2010-10-06 12:47:20 +0200 (Wed, 06 Oct 2010) | 3 lines

pipe.delete() without args will now delete all data pipes.
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pipe.delete() without args will now delete all data pipes.

Added some checks to the dauvergne_protocol mf analysis for the required previously optimised results.

Bug fix for the maximum number of iterations in the model-free GUI frame.

This was not being respected as it was being sent into dauvernge_protocol as a string, not and int.

Cleaned up some of the status text printed out by the GUI during the automatic mf analysis.

The automatic execution of all the global model-free models is functional again.

The looping over models has been shifted inside the thread. Otherwise the local_tm model is not
complete before the other models/threads start.

STDERR is now going to the relax controller window for the model-free calculations.

Removed the field strength print outs as these are being redirected to the terminal, not the controller.

The font in the controller window is now fixed width.

relax's output is designed to be read as fixed width, so this makes the output more readable.