relax SVN archive

Abstracted the common code in compile_2nd_matrix_*() into rotate_daeg().

This will significantly simplify the addition of all of the 12 models.

Shifted all of the shared code in the frame order target functions to reduce_and_rot().

This significantly simplifies the code base and removes a large source of bugs.

Partial support for the 12 parametric restriction models of the pseudo-ellipse.

All of the specific frame order code can now support these models. The maths_fns code is still
missing, so not all models are available.

The frame_order.select_model() user fn docstring now describes all 12 parametric restriction models.

Added target function aliases for all 12 parameteric restriction models of the pseudo-ellipse.

Added the missing hyphen to 'pseudo ellipse' in the docstrings.

Created the pseudo-ellipse, free rotor target function.

This model is not yet available.

Created the torsionless pseudo-ellipse cone model, where the torsion angle simga is zero.

Merged revisions 11381-11385 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r11381 | bugman | 2010-07-28 11:13:46 +0200 (Wed, 28 Jul 2010) | 6 lines

Removed the docstring length check from the code validator script and changed a printout.

The docstring length is only 100 characters in the user functions. For all other functions, no
length is enforced.
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r11382 | bugman | 2010-07-28 11:38:32 +0200 (Wed, 28 Jul 2010) | 3 lines

The attached proton PDB name is no longer hardcoded to 'H' in the dauvergne_protocol auto analysis.
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r11383 | bugman | 2010-07-29 14:18:18 +0200 (Thu, 29 Jul 2010) | 3 lines

The back-calculated alignments tensors are now being stored in the current data pipe.
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r11384 | bugman | 2010-07-29 16:11:51 +0200 (Thu, 29 Jul 2010) | 3 lines

The align_tensor.display() user function now prints out the generalized degree of order (GDO) value.
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r11385 | bugman | 2010-07-29 17:58:54 +0200 (Thu, 29 Jul 2010) | 3 lines

pipe.display() now places quotation marks around the pipe names and shows which is the current data pipe.
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Fixed labeling of proton container (self.proton to data.proton).