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SVN archive Commit Log


Commit Date  
[r11153] by bugman

Big bug fixes for the _minimise_setup_pcs() and _minimise_setup_rdcs() methods.

This allows the missing data PCS and RDC optimisation system test to pass. Many problems were
solved to allow all types of data with anything missing (one spin in one alignment, one spin in all
RDC or all PCS lists, or entire RDC or PCS lists for one alignment).

2010-04-27 15:55:04 Tree
[r11152] by bugman

Bug fix for the __det_pdb_element() method.

RNA PDB files with missing element information is now handled properly. The stripping of the "'"
was being ignored.

2010-04-27 15:45:01 Tree
[r11151] by bugman

Removed a debugging print statement.

2010-04-27 15:35:45 Tree
[r11150] by bugman

Fixes for the structure.load_spins() user function docstring for RNA/DNA work.

2010-04-27 15:30:47 Tree
[r11149] by bugman

Modified the dna_pcs_fit.py N-state model system test script to use the truncated PDB file.

This speeds the system test up by orders of magnitude.

2010-04-27 15:05:09 Tree
[r11148] by bugman

Created a truncated version of the LE.pdb file for the RDC and PCS system tests.

This contains just the atoms for PCS and RDCs, and will significantly speed up the tests.

2010-04-27 14:22:01 Tree
[r11147] by bugman

Loosened a value check in the test_pcs_fit_zero_pos N-state model system test.

This was sometimes failing, but the value was correct enough.

2010-04-27 14:20:11 Tree
[r11146] by bugman

Created the test_missing_data N-state model system test.

This should pull out a few hard to find bugs.

2010-04-27 14:17:54 Tree
[r11145] by bugman

Wrote a script for testing the missing RDC and PCS data.

This uses the N-state model with N=1, so direct testing of the single state to 4 tensors.

2010-04-27 14:08:02 Tree
[r11144] by bugman

Created some test RDC and PCS data to test the handling of missing data.

This includes entire data sets missing, spins missing from one type of data, and individual spins
missing.

2010-04-27 14:04:51 Tree
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