relax SVN archive

Redirection of system output to the controllre is activated (error output is still disabled).

Storage of thread id is removed from auto_rx_base.py as it is unused (threads can't get killed).

Relaxation times are converted into float objects before starting automatic analysis.

The DummyFileObject is now correctly assigned.

Unused code was deleted.

Updated progress bar using Monte Carlo simulation number is also accessible for Rx curvefit.

The controller reads in current Monte Carlo simulation from status.py and updates the progress bar.

relaxGUI sets PDB file name to None before starting Rx curvefit.

This was suggested by Edward d'Auvergne (https://mail.gna.org/public/relax-devel/2010-04/msg00013.html).

Merged revisions 11053-11059,11070-11071 via svnmerge from
svn+ssh://michaelbieri@.../svn/relax/1.3

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r11053 | bugman | 2010-03-29 20:50:39 +1100 (Mon, 29 Mar 2010) | 5 lines

Modified the spheroid diffusion tensor data generation so that Z is the symmetry axis.

This will allow direct mapping of Euler angles to spherical angles!
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r11054 | bugman | 2010-03-29 23:46:43 +1100 (Mon, 29 Mar 2010) | 3 lines

Fixes for the tests of the spheroid diffusion tensor.
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r11055 | bugman | 2010-03-30 02:24:46 +1100 (Tue, 30 Mar 2010) | 3 lines

The unit bond vectors are now normalised using the numpy.linalg.norm() function.
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r11056 | bugman | 2010-03-30 02:27:15 +1100 (Tue, 30 Mar 2010) | 5 lines

The simulation of PDB coordinate truncation now occurs after vector scaling by r.

This should now be a more accurate representation and allow relax to find these values exactly.
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r11057 | bugman | 2010-03-30 02:40:08 +1100 (Tue, 30 Mar 2010) | 3 lines

The spheroid diffusion tensor optimisation test now checks the values.
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r11058 | bugman | 2010-03-30 02:41:46 +1100 (Tue, 30 Mar 2010) | 3 lines

The ellipsoidal diff tensor relaxation data was not fully regenerated in r11056.
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r11059 | bugman | 2010-03-30 02:44:32 +1100 (Tue, 30 Mar 2010) | 6 lines

The ellipsoidal diff tensor check in check_ellipsoid() now functions better.

The diffusion elements are scaled down to the order of 1 so that the assertAlmostEqual() calls do
not fail with tiny machine precision differences.
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r11070 | bugman | 2010-04-12 23:25:06 +1000 (Mon, 12 Apr 2010) | 5 lines

Bug fix - 'local_mf_model' should have been called 'local_tm_model'.

This problem was identified by Michael (http://gna.org/task/?6847#comment44).
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r11071 | bugman | 2010-04-13 00:54:23 +1000 (Tue, 13 Apr 2010) | 8 lines

Correct repetitions spectra (again...)

This corresponds to the patch patch_load__correct_repetitions_spectra from Michael (in
http://gna.org/support/download.php?file_id=8921).

Repeated spectra are set correctly and unresolved file is read correctly.
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Correct repetitions spectra (again...)

This corresponds to the patch patch_load__correct_repetitions_spectra from Michael (in
http://gna.org/support/download.php?file_id=8921).

Repeated spectra are set correctly and unresolved file is read correctly.