relax SVN archive

The multi-processor intro string is now word wrapped to the given console width.

Reintroduced into the intro string the processor fabric info print out.

Fixes for the name change of the mpi4py module import flag.

Merged revisions 10865 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r10865 | bugman | 2010-02-23 18:31:03 +0100 (Tue, 23 Feb 2010) | 5 lines

The Info_box is now really a singleton - a bug in __new__() has been eliminated.
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The Info_box is now really a singleton - a bug in __new__() has been eliminated.

The processor fabric intro string is now placed into the info box.

Merged revisions 10845-10860,10862 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r10845 | bugman | 2010-02-23 11:15:31 +0100 (Tue, 23 Feb 2010) | 5 lines

Added a 6th stage to the stereochemistry analysis script.

This is the ordering of all ensembles using a combined Q-factor.
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r10846 | bugman | 2010-02-23 11:18:32 +0100 (Tue, 23 Feb 2010) | 3 lines

Added a check for the stage number in the stereochemistry auto analysis.
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r10847 | bugman | 2010-02-23 11:43:47 +0100 (Tue, 23 Feb 2010) | 5 lines

Stage 6, the combined Q-factor and final ordering is now complete.

The combined_q() method was written to perform this last analysis.
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r10848 | bugman | 2010-02-23 13:29:04 +0100 (Tue, 23 Feb 2010) | 5 lines

The modules are no longer deleted after import from dep_check.

This will allow dep_check to be used for extracting package information by the Info_box.
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r10849 | bugman | 2010-02-23 13:44:08 +0100 (Tue, 23 Feb 2010) | 3 lines

Added checks for the bmrblib and Numeric packages.
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r10850 | bugman | 2010-02-23 13:49:32 +0100 (Tue, 23 Feb 2010) | 3 lines

Added a specific import check for Scientific - the other checking the PDB module import.
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r10851 | bugman | 2010-02-23 13:52:53 +0100 (Tue, 23 Feb 2010) | 3 lines

Added a check for the wx module.
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r10852 | bugman | 2010-02-23 13:54:49 +0100 (Tue, 23 Feb 2010) | 3 lines

Added a check for the mpi4py module.
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r10853 | bugman | 2010-02-23 13:55:24 +0100 (Tue, 23 Feb 2010) | 3 lines

Made the mpi4py import flag more consistent.
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r10854 | bugman | 2010-02-23 14:05:49 +0100 (Tue, 23 Feb 2010) | 3 lines

Added an import check for epydoc.
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r10855 | bugman | 2010-02-23 14:20:57 +0100 (Tue, 23 Feb 2010) | 3 lines

Imported os in the os.devnull import check, and deleted devnull.
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r10856 | bugman | 2010-02-23 14:23:45 +0100 (Tue, 23 Feb 2010) | 5 lines

Redesigned package_info() to remove the dependence on the pkg_resources module.

This was a problem in many old python versions. The package info is now presented in a table.
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r10857 | bugman | 2010-02-23 14:27:27 +0100 (Tue, 23 Feb 2010) | 3 lines

Added the relax C module compilation info.
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r10858 | bugman | 2010-02-23 14:28:33 +0100 (Tue, 23 Feb 2010) | 3 lines

The version-less modules now have an empty string for the version printed.
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r10859 | bugman | 2010-02-23 14:34:47 +0100 (Tue, 23 Feb 2010) | 6 lines

Made Info_box.sys_info() fault tolerant.

All the contents of the platform module are checked before added the text, allowing for older python
versions.
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r10860 | bugman | 2010-02-23 16:06:48 +0100 (Tue, 23 Feb 2010) | 17 lines

A python 3.0 fix for the grace module.

The command used was:
2to3 -w \
> -f buffer \
> -f idioms \
> -f set_literal \
> -f ws_comma \
> -x except \
> -x import \
> -x imports \
> -x long \
> -x numliterals \
> -x xrange \
> relax .
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r10862 | bugman | 2010-02-23 18:20:45 +0100 (Tue, 23 Feb 2010) | 5 lines

Converted the Info_box into a singleton.

This will allow for execution specific info to be placed in here and accessed by all.
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Converted the Info_box into a singleton.

This will allow for execution specific info to be placed in here and accessed by all.

Fix for the Capturing_exception class.

Sometimes the exc_info does not correspond to an exception (i.e. sys.exc_info() returns None). This
is now caught and the class returns silently. The result is that the true traceback from the slaves
is printed!

A python 3.0 fix for the grace module.

The command used was:
2to3 -w \
> -f buffer \
> -f idioms \
> -f set_literal \
> -f ws_comma \
> -x except \
> -x import \
> -x imports \
> -x long \
> -x numliterals \
> -x xrange \
> relax .