relax SVN archive

Fixes for the name change of the mpi4py module import flag.

Merged revisions 10865 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r10865 | bugman | 2010-02-23 18:31:03 +0100 (Tue, 23 Feb 2010) | 5 lines

The Info_box is now really a singleton - a bug in __new__() has been eliminated.
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The Info_box is now really a singleton - a bug in __new__() has been eliminated.

The processor fabric intro string is now placed into the info box.

Merged revisions 10845-10860,10862 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r10845 | bugman | 2010-02-23 11:15:31 +0100 (Tue, 23 Feb 2010) | 5 lines

Added a 6th stage to the stereochemistry analysis script.

This is the ordering of all ensembles using a combined Q-factor.
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r10846 | bugman | 2010-02-23 11:18:32 +0100 (Tue, 23 Feb 2010) | 3 lines

Added a check for the stage number in the stereochemistry auto analysis.
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r10847 | bugman | 2010-02-23 11:43:47 +0100 (Tue, 23 Feb 2010) | 5 lines

Stage 6, the combined Q-factor and final ordering is now complete.

The combined_q() method was written to perform this last analysis.
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r10848 | bugman | 2010-02-23 13:29:04 +0100 (Tue, 23 Feb 2010) | 5 lines

The modules are no longer deleted after import from dep_check.

This will allow dep_check to be used for extracting package information by the Info_box.
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r10849 | bugman | 2010-02-23 13:44:08 +0100 (Tue, 23 Feb 2010) | 3 lines

Added checks for the bmrblib and Numeric packages.
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r10850 | bugman | 2010-02-23 13:49:32 +0100 (Tue, 23 Feb 2010) | 3 lines

Added a specific import check for Scientific - the other checking the PDB module import.
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r10851 | bugman | 2010-02-23 13:52:53 +0100 (Tue, 23 Feb 2010) | 3 lines

Added a check for the wx module.
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r10852 | bugman | 2010-02-23 13:54:49 +0100 (Tue, 23 Feb 2010) | 3 lines

Added a check for the mpi4py module.
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r10853 | bugman | 2010-02-23 13:55:24 +0100 (Tue, 23 Feb 2010) | 3 lines

Made the mpi4py import flag more consistent.
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r10854 | bugman | 2010-02-23 14:05:49 +0100 (Tue, 23 Feb 2010) | 3 lines

Added an import check for epydoc.
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r10855 | bugman | 2010-02-23 14:20:57 +0100 (Tue, 23 Feb 2010) | 3 lines

Imported os in the os.devnull import check, and deleted devnull.
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r10856 | bugman | 2010-02-23 14:23:45 +0100 (Tue, 23 Feb 2010) | 5 lines

Redesigned package_info() to remove the dependence on the pkg_resources module.

This was a problem in many old python versions. The package info is now presented in a table.
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r10857 | bugman | 2010-02-23 14:27:27 +0100 (Tue, 23 Feb 2010) | 3 lines

Added the relax C module compilation info.
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r10858 | bugman | 2010-02-23 14:28:33 +0100 (Tue, 23 Feb 2010) | 3 lines

The version-less modules now have an empty string for the version printed.
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r10859 | bugman | 2010-02-23 14:34:47 +0100 (Tue, 23 Feb 2010) | 6 lines

Made Info_box.sys_info() fault tolerant.

All the contents of the platform module are checked before added the text, allowing for older python
versions.
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r10860 | bugman | 2010-02-23 16:06:48 +0100 (Tue, 23 Feb 2010) | 17 lines

A python 3.0 fix for the grace module.

The command used was:
2to3 -w \
> -f buffer \
> -f idioms \
> -f set_literal \
> -f ws_comma \
> -x except \
> -x import \
> -x imports \
> -x long \
> -x numliterals \
> -x xrange \
> relax .
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r10862 | bugman | 2010-02-23 18:20:45 +0100 (Tue, 23 Feb 2010) | 5 lines

Converted the Info_box into a singleton.

This will allow for execution specific info to be placed in here and accessed by all.
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Converted the Info_box into a singleton.

This will allow for execution specific info to be placed in here and accessed by all.

Fix for the Capturing_exception class.

Sometimes the exc_info does not correspond to an exception (i.e. sys.exc_info() returns None). This
is now caught and the class returns silently. The result is that the true traceback from the slaves
is printed!

A python 3.0 fix for the grace module.

The command used was:
2to3 -w \
> -f buffer \
> -f idioms \
> -f set_literal \
> -f ws_comma \
> -x except \
> -x import \
> -x imports \
> -x long \
> -x numliterals \
> -x xrange \
> relax .

Made Info_box.sys_info() fault tolerant.

All the contents of the platform module are checked before added the text, allowing for older python
versions.

The version-less modules now have an empty string for the version printed.