relax SVN archive

Created the rdc.calc_q_factors() and pcs.calc_q_factors() user functions.

The back-calculated RDC/PCS data must first be generated by the specific code.

The Q-factor calculation functions can now accept a spin_id arg.

As there can now be data problems, the functions check if there is any selected spins looped over,
that the is RDC/PCS data, and that there is back-calculated RDC/PCS data.

Shifted the RDC and PCS Q-factor calculation code.

The methods previously in the N-state model specific code have been converted to functions of the
generic_fns.rdc and generic_fns.pcs modules.

Added the tilt and torsion angle convention conversions to and from rotation matrices.

Alphabetical ordering of the rotation matrix module functions.

Updated the references page to be more relax specific.

This matches the HTML window of references in the Bieri relax GUI.

Added my PhD thesis to the list of references for relax.

Merged revisions 10703-10704 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r10703 | bugman | 2010-02-16 14:16:23 +0100 (Tue, 16 Feb 2010) | 5 lines

The proper function from the order_parameters module is being called to calc the cone angle.

This allows the code to operate, but the function is not yet implemented.
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r10704 | bugman | 2010-02-16 14:38:47 +0100 (Tue, 16 Feb 2010) | 5 lines

Fix for the cite_html() bibliography method.

The <em> tag was not being closed!
........

Fix for the cite_html() bibliography method.

The <em> tag was not being closed!

The proper function from the order_parameters module is being called to calc the cone angle.

This allows the code to operate, but the function is not yet implemented.