relax SVN archive

Shifted the RDC and PCS Q-factor calculation code.

The methods previously in the N-state model specific code have been converted to functions of the
generic_fns.rdc and generic_fns.pcs modules.

Added the tilt and torsion angle convention conversions to and from rotation matrices.

Alphabetical ordering of the rotation matrix module functions.

Updated the references page to be more relax specific.

This matches the HTML window of references in the Bieri relax GUI.

Added my PhD thesis to the list of references for relax.

Merged revisions 10703-10704 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r10703 | bugman | 2010-02-16 14:16:23 +0100 (Tue, 16 Feb 2010) | 5 lines

The proper function from the order_parameters module is being called to calc the cone angle.

This allows the code to operate, but the function is not yet implemented.
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r10704 | bugman | 2010-02-16 14:38:47 +0100 (Tue, 16 Feb 2010) | 5 lines

Fix for the cite_html() bibliography method.

The <em> tag was not being closed!
........

Fix for the cite_html() bibliography method.

The <em> tag was not being closed!

The proper function from the order_parameters module is being called to calc the cone angle.

This allows the code to operate, but the function is not yet implemented.

Shifted the "Contact relaxGUI" and "References" menu entries into the "Help" menu.

The "Extras" menu has been deleted. These menu entries are better suited for the help menu,
especially the "Contact relaxGUI".

Modified how the relax references are handled.

Instead of opening http://www.nmr-relax.com/refs.html in a browser, a HTML window is now being used
to display all relevant references. The refs are coming from the info container.

This is far from complete. To be added are:
- Links "(more)" added to the end of each reference. This will open a new HTML page with the
full information, DOI link, abstract, etc. for each reference separately.
- Make the DOI link open in a brower.
- Make the forward and reverse buttons functional.

The HTML also needs to be prettified.