relax SVN archive

Bug fix: data.pdb_file is actually called data.structure_file!

Bug fix for execute_thread().

The data.diff_model variable does not exist, it is the global model arg!!!

Temporary commit - this disables the threaded execution and the IO redirection.

Some threading bug is being hidden by a bug in the IO redirection.

Reverted the temporary r10510.

The command used was:
svn merge -r10510:10509 .

.....
r10510 | bugman | 2010-01-28 13:39:50 +0100 (Thu, 28 Jan 2010) | 3 lines
Changed paths:
M /branches/bieri_gui/gui_bieri/analyses/auto_model_free.py

Temporarily disabled IO redirection to the controller for debugging.
.....

Spun out all of the code internal to the thread from execute() into execute_thread().

execute() now calls execute_thread() as a thread, and then stores the thread info.

Reverted r10514.

The command used was:
svn merge -r10514:10513 .

The thread execution should be at a higher level than at dAuvergne_protocol as the execute() method
has code which should be run within the thread.

The object returned by assemble_data() is now a dictionary.

Fix for the starting of the dAuvergne_protocol thread.

The structural file variable was incorrectly referenced.

Bug fix in assemble_data(). data.local_mf_models should be called data.local_tm_models.

Added the missing time import.