relax SVN archive

Fixed the gui_bieri module imports.

Removed all the unused imports.

The main GUI class instance is now passed into the Auto_model_free class.

This will create a nested object tree structure so that all parts of the GUI can access all other
parts.

The self.modelfree GUI panel is now passed into Auto_model_free.

Started to spin off the automatic model-free protocol GUI code into its own module.

Converted the module comment into a module docstring.

Bug fix for the thread execution.

'self' was being passed in as the last argument, but this is not how execution should occur. Either
the data is directly passed in as args to start_model_free or this function is merged back into a
module for the automatic model-free protocol GUI elements.

Fix for the execution of the automatic model-free analysis.

The method start_modelfree should have been called rather than start_model_free. These two names
are confusing and will have to be renamed.

Eliminated the duplicated code from the full_analysis.py script within the GUI.

This is discussed in the post https://mail.gna.org/public/relax-devel/2010-01/msg00075.html.

The dAuvergne_protocol class is now being used for performing the automatic analysis. This matches
the changes in r10296 in the 1.3 line:

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r10296 | bugman | 2010-01-25 11:13:06 +0100 (Mon, 25 Jan 2010) | 14 lines
Changed paths:
A /1.3/auto_analyses
A /1.3/auto_analyses/__init__.py (from /1.3/generic_fns/__init__.py:10204)
A /1.3/auto_analyses/dauvergne_protocol.py (from /1.3/sample_scripts/full_analysis.py:10204)
M /1.3/sample_scripts/full_analysis.py

Spun out the automatic model-free protocol code from the full_analysis.py script.

This is discussed in the post https://mail.gna.org/public/relax-devel/2010-01/msg00075.html.

The aim is to have a single code base for the automatic protocols for all UI designs (prompt,
script, GUI, web interface, etc.). The API interface will be via class initialisations. The
automatic model-free protocol has been placed into the dAuvergne_protocol class.

Future aims of this code is to have the UI fill a single data pipe with all the data required for
the analysis, and then to pass in this pipe into the protocol. Then the auto-analysis will copy
this info into any other data pipes it requires. This will allow for better GUI interaction, data
display, etc.
.....

Merged revisions 10330 via svnmerge from
svn+ssh://bugman@.../svn/relax/1.3

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r10330 | bugman | 2010-01-25 21:01:23 +0100 (Mon, 25 Jan 2010) | 3 lines

As a precaution, the spins will always be named in the automatic model-free protocol.
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