relax SVN archive

The new module for the relaxGUI log window.

This is the file https://gna.org/support/download.php?file_id=7727 attached to task #6847
(https://gna.org/task/?6847) by Michael Bieri (https://gna.org/users/michaelbieri).

Created feedback to relaxGUI Log Window during NOE calculation.

This corresponds to the calc_noe_patch file attached to https://gna.org/task/?6847 by
Michael Bieri (https://gna.org/users/michaelbieri), in the zip file
https://gna.org/support/download.php?file_id=7726.

added:

class RedirectText --> redirect the relax output to relaxGUI Log Window

# Number of Monte Carlo simulations
global montecarlo
montecarlo = int(global_setting[6])

--> set monte carlo value for updating progress bar in log window

# value for progress bar during monte carlo simulation
global progress
progress = 5.0

--> initial progress value before monte carlo simulation

# redirect relax output and errors to relaxGUI - log panel
redir=RedirectText(self)
sys.stdout=redir
sys.stderr=redir

redirecting system output and error to new created class that updates log
window

Created feedback to relaxGUI Log Window during Rx calculation

This corresponds to the calc_rx_patch file attached to https://gna.org/task/?6847 by
Michael Bieri (https://gna.org/users/michaelbieri), in the zip file
https://gna.org/support/download.php?file_id=7726.

added:

class RedirectText --> redirect the relax output to relaxGUI Log Window

# Number of Monte Carlo simulations
global montecarlo
montecarlo = int(global_setting[6])

--> set monte carlo value for updating progress bar in log window

# value for progress bar during monte carlo simulation
global progress
progress = 5.0

--> initial progress value before monte carlo simulation

# redirect relax output and errors to relaxGUI - log panel
redir=RedirectText(self)
sys.stdout=redir
sys.stderr=redir

redirecting system output and error to new created class that updates log
window

Replaced tabulators to 4 space characters in calc_model_free.py.

This corresponds to the removed_tab_in_modelfree_patch file attached to https://gna.org/task/?6847
by Michael Bieri (https://gna.org/users/michaelbieri), in the zip file
https://gna.org/support/download.php?file_id=7726.

This patch contained far more changes than just the tab fixes, but only that part is being committed
here. The gui_bieri.relax_gui changes appear to be in the other patches anyway.

Replaced 'form xxxx import *' with 'from xxx import yyy, aaa....' in relax_gui.py.

This corresponds to the import_patch file attached to https://gna.org/task/?6847 by
Michael Bieri (https://gna.org/users/michaelbieri), in the zip file
https://gna.org/support/download.php?file_id=7726.

The about relaxGUI panel does not create its own wx application.

removed in about.py:
- app = wx.PySimpleApp(0)
- wx.InitAllImageHandlers()
- start = MyFrame(None, -1, "")
- app.SetTopWindow(start)
- start.Show()
- app.MainLoop()

changed:
xw.Frame to wx.Dialog in about.py

moved in _init_.py (main folder):

+ # start wx Application
+ relaxGUI = wx.PySimpleApp(0)
+ wx.InitAllImageHandlers()

--> to start one wx application for about panel and main relaxGUI window

Clean up of the menubar code.

The SetMenuBar() call has been shifted out of the menu items to the top. The GUI object have been
simplified (shorter names) and are no longer placed in self.

Modified the package docstring as it does not need to be set using __doc__ = ...

Changed the icons for the Molecule menu entries.

This is just to improve the looks.

Modified all the other menu sub entries to include icons using the build_menu_sub_item() method.

All the oxygen icons required, as well as a 16x16 relax icon have been added to the repository.