Nifty Reg Activity
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Activity for Nifty Reg
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Marc Modat committed [b76bac]
Issue #34: fixed ordering in cmake. removed remaining exit() calls
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Merge branch '34-preprocessor-error' into 'master'
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Removed a few warning on MacOs
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Issue 26: Changed Eigen version - still pb with cuda and opencl with VS2015
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Issue #26: fixed some more windows warnings
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Merge branch '26-msvc-2015-fixes' into 'master'
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Issue #22: Added a function to apply known transformation to landmark(s)
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Merge branch '22-apply-transformation-to-landmark' into 'master'
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Issue #29: Scale the linear energy in f3d as in f3d2
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Merge branch '29-modifying-linear-energy-weight-between-levels' into 'master'
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Issue #31: Adding an option to set padding value in reg_aladin
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Merge branch '31-adding-a-padding-option-in-reg_aladin' into 'master'
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Issue #32: Error in reg_average argument indexing
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Merge branch '32-groupwise_niftyreg_run-sh-fails-after-first-rigid-registration-iteration' into 'master'
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Merge branch '27-bugs-in-reg_tools-and-reg_transform' of cmiclab.cs.ucl.ac.uk:mmodat/niftyreg into 27-bugs-in-reg_tools-and-reg_transform
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Jamie McClelland committed [34309a]
fixed bug in reg_tools by removing unwanted ==0 when testing if a number or file name has been provided
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fixed bug in reg_tools by removing unwanted ==0 when testing if a number or file name has been provided
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Merge branch '27-bugs-in-reg_tools-and-reg_transform' into 'master'
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Rachel Sparks committed [f102c7]
Issue #30: Version now being configured in CMake.
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Matt Clarkson committed [2041b4]
Issue #30: Explicitly static cast to remove warning.
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Rachel Sparks committed [2e5299]
Issue #30: Changing reg_f3d parameters to allow for mind similarity metric.
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Rachel Sparks committed [37e8da]
Issue #30 fixing flags so --nan will correctly exclude image values.
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Rachel Sparks committed [cfbb17]
Issue #30: Fixing detection of default values for constant add, sub, div, and mul.
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Merge branch '30-update-cli-flags' into 'master'
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Rachel Sparks committed [d35da3]
Issue #30: Adding a helper function to correctly parse float-vectors from the cli.
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Rachel Sparks committed [d526e2]
Issue #30: adding in new flags for cli modules.
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Issue #25: Removed the discrete related code for now.
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Merge branch '25-cleaning-discrete-code' into 'master'
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Issue #24: Wrong index was checked in reg_average\nCaused to fail when only one image or matrix was being averaged
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Merge branch '24-reg_average-fails-with-one-input' into 'master'
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Removed pngtest.c from the png source. Thanks Floris B.
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Adding a unit test for spline composition
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Issue #20: Force SSE3 to be used for non MSVC
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Merge branch '19-reg_test_coherence_blockmatching-error' into 'master'
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Issue #19: Error in a block matching variable accumulation with openmp
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Modified the matlab cmake interaction
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Merge branch 'update-cmake-matlab-windows'
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Merge branch '16-local_weighting_sim'
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Issue #16: change the help message
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Issue #18: Fix the SSD unit tests and removed a few warnings
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Issue #16: Initial implementation. Only works for SSD - forward
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Merge branch '18-reg_test_measure_ssd_-d-unit-tests-fail' into 'master'
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Merge branch '17-reg_average-needs-omp-flag-for-nipype-interface' into 'master'
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Issue #17: Removed the omp flag when specified through a file, for nipype interface
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Removed the unrequired NiftyRegSetEnvUnix.sh file
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Irrelevenat changes to test sync. Try number 5
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Irrelevenat changes to test sync. Try number 3
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Irrelevenat changes to test sync. Try number 4
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Irrelevenat changes to test sync. Try number 1
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Irrelevenat changes to test sync. Try number 2
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Merge branch '13-reg_f3d-crash-with-long-inputs' into 'master'
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Ian Malone committed [476fd8]
Replace some of the more vulnerable sprintf usage with a std::string producing function stringFormat.
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Merge branch 'sim_and_timepoint_weights'
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Modified the downsampling to use NN interpolation
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b#3: removed the coherence mrf test
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Leak in reg_average
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Merge branch '10-dense_le' into 'master'
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Unit tests for approx and dense linear elasticity value and gradient implemented
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Issue #12: Landmark based regularisation. Measure and gradient.
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Error when using input images with nifti extensions and the stationary velocity field
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Error when setting a library dependency for reg_test_measure
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Merge branch '6-f3d2-blocked-axis-error' into 'master'
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Issue #6: Modified f3d2 to enable to non optimise specified axis
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Added unit tests for the linear elasticity and added dense implementation from spline and deformation field
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Issue #4: Included the matlab files used to generate the unit test data
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Added look up table for spline
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Modified the size of the buffer in aladin and f3d to allow for longer command line
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Merge branch 'dev' into 'master'
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Issue #8: Added unit tests for the BSpline deformation field
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Merge branch '4-unit-test-data-generation' into 'master'
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Ian Malone committed [878060]
Should close issue 14, check that the matrix to be log() has non-zero determinant, main cause of the log algorithm failing to converge and hanging.
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Removed a few warning due to empty function
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Error in debug and jac det vel computation fixed
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Merge branch '8-lut_spline' into 'master'
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Merge branch 'master' into '4-unit-test-data-generation'
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#5: Modified reg_average to accept a file as argument.
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b#3: Modified the gradient test to use the spline interpolation as it is equivalent to symmetric difference when an identity transformation
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Merge branch '5-reg_average_file_input' into 'master'
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Merge branch 'b3-unit_test_errors' into 'dev'
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Merge branch '14-reg_maths_eigen-check-matrix-invertible-before-log' into 'master'
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Removed a few warnings and modified the spline deformation field test
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Jamie McClelland committed [93cc74]
implemented weighting of different channels/timepoints and similarity measures
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enable to copy the test data without matlab installed
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Jamie McClelland committed [b65de2]
similarity/channel weights normalised so total = 1 (which will then be multiplied by 1 - contraint weights)
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Minor modifications of the cmakelists.txt file to correct a few errors
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SSD test was missing the normalisation step
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Error in help when compiled without openmp
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Create a hook stored on the repo for set the bu...
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checkout my versioning hook
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Adding build versioning using git
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Corrected the average image normalisation
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Modified the reg_average behaviour to remove nan
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Error in the aladin destructor when no registra...
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ben committed [278871]
corrected some memory leaks
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Merge branch 'aladin-platform-refactoring' of s...
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£
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a compiler supporting C++11 is required now
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renamed some files for uppercase letters
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created the cuda kernels
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created new kernels - need to do the cuda version
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