Recent changes to Developer Documentation

Developer Documentation modified by Jordan Deyton

Jordan Deyton — Wed, 17 Dec 2014 19:47:34 -0000

--- v21
+++ v22
@@ -12,9 +12,9 @@
 # Tutorials

 [Your First Plug-in Part 1: Extending NiCE with custom Items](Your First Plug-in Part 1%3A Extending NiCE with custom Items)  
-[Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers](Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers)  
-[Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in](Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in)  
-[Your First Plug-in Part 4: Extending your plug-in to generate input files](Your First Plug-in Part 4: Extending your plug-in to generate input files)  
+[Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers](Your First Plug-in Part %3A: Using the Job Profile Editor to create Job Launchers)  
+[Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in](Your First Plug-in Part 3%3A Creating a Java-based Job Launcher with an OSGi NiCE plug-in)  
+[Your First Plug-in Part 4: Extending your plug-in to generate input files](Your First Plug-in Part 4%3A Extending your plug-in to generate input files)  
 [Creating a NiCE XML File From Schema](Creating a NiCE XML File From Schema) - A Tutorial for creating XML files with the a provided schema file for NiCE.     

 [Creating OSGi Bundles from 3rd Party JARs](Creating OSGi Bundles from 3rd Party JARs) - Information on creating OSGi bundles based on pre-existing Java .jar files.

Developer Documentation modified by Jay Jay Billings

Jay Jay Billings — Wed, 17 Dec 2014 19:41:23 -0000

--- v20
+++ v21
@@ -11,7 +11,7 @@

 # Tutorials

-[Your First Plug-in Part 1: Extending NiCE with custom Items](Your First Plug-in Part 1: Extending NiCE with custom Items)  
+[Your First Plug-in Part 1: Extending NiCE with custom Items](Your First Plug-in Part 1%3A Extending NiCE with custom Items)  
 [Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers](Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers)  
 [Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in](Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in)  
 [Your First Plug-in Part 4: Extending your plug-in to generate input files](Your First Plug-in Part 4: Extending your plug-in to generate input files)

Developer Documentation modified by Jay Jay Billings

Jay Jay Billings — Wed, 17 Dec 2014 19:39:13 -0000

--- v19
+++ v20
@@ -11,7 +11,7 @@

 # Tutorials

-[Your First Plug-in Part 1\: Extending NiCE with custom Items](Your First Plug-in Part 1: Extending NiCE with custom Items)  
+[Your First Plug-in Part 1: Extending NiCE with custom Items](Your First Plug-in Part 1: Extending NiCE with custom Items)  
 [Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers](Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers)  
 [Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in](Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in)  
 [Your First Plug-in Part 4: Extending your plug-in to generate input files](Your First Plug-in Part 4: Extending your plug-in to generate input files)

Developer Documentation modified by Jay Jay Billings

Jay Jay Billings — Wed, 17 Dec 2014 19:38:39 -0000

--- v18
+++ v19
@@ -11,7 +11,7 @@

 # Tutorials

-[Your First Plug-in Part 1: Extending NiCE with custom Items](Your First Plug-in Part 1: Extending NiCE with custom Items)  
+[Your First Plug-in Part 1\: Extending NiCE with custom Items](Your First Plug-in Part 1: Extending NiCE with custom Items)  
 [Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers](Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers)  
 [Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in](Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in)  
 [Your First Plug-in Part 4: Extending your plug-in to generate input files](Your First Plug-in Part 4: Extending your plug-in to generate input files)

Developer Documentation modified by Jay Jay Billings

Jay Jay Billings — Fri, 12 Dec 2014 00:14:47 -0000

Developer Documentation modified by Dasha

Dasha — Thu, 24 Jul 2014 15:05:44 -0000

--- v16
+++ v17
@@ -41,9 +41,9 @@
 [Geometry Editor](Geometry Editor) - A partial list of features and requirements for the NiCE Geometry Editor.  
 [Job Profile](Job Profile) - Information on creating Job Profiles in NiCE.   
 [Nek5000 Notes](Nek5000 Notes) - Basic information on Nek5000, plugin development, and usage.   
-[NiCE LWR Object Model](NiCE LWR Object Model) - A description of the LWR model in NiCE.  
-[NiCE Painfully Simple Form](NiCE Painfully Simple Form) - Documentation on NiCE's "Painfully Simple Forms" and the associated file format.   
-[NiCE SFR Object Model](NiCE SFR Object Model) - A description of the SFR model in NiCE.  
+[NiCE LWR Object Model](NiCE LWR Object Model) - A description of the LWR model in NiCE.   
+[NiCE SFR Object Model](NiCE SFR Object Model) - A description of the SFR model in NiCE.
+[Painfully Simple Form](Painfully Simple Form) - Documentation on NiCE's "Painfully Simple Forms" and the associated file format.  
 [Resources for TableViewer](Resources for TableViewer) - Documentation and references on TableViewer.

 ## Additional Tools in NiCE

Developer Documentation modified by Dasha

Dasha — Wed, 25 Jun 2014 21:46:01 -0000

--- v15
+++ v16
@@ -17,7 +17,6 @@
 [Your First Plug-in Part 4: Extending your plug-in to generate input files](Your First Plug-in Part 4: Extending your plug-in to generate input files)  
 [Creating a NiCE XML File From Schema](Creating a NiCE XML File From Schema) - A Tutorial for creating XML files with the a provided schema file for NiCE.

-[Java Fundamentals](Java Fundamentals) - Information on basic and advanced features of Java   
 [Creating OSGi Bundles from 3rd Party JARs](Creating OSGi Bundles from 3rd Party JARs) - Information on creating OSGi bundles based on pre-existing Java .jar files.   

 # Documentation

Developer Documentation modified by Dasha

Dasha — Wed, 25 Jun 2014 17:53:26 -0000

--- v14
+++ v15
@@ -1,4 +1,4 @@
-This page is for programmers who would like to know the internal workings of NiCE and/or intend to modify the code. For regular users, the [Main Page](https://sourceforge.net/p/niceproject/docs/Main%20Page/) would be more helpful. 
+This page is for programmers who would like to know the internal workings of NiCE and/or intend to modify the code. For regular users, the [Main Page](Main Page) would be more helpful.

 **Table of Contents**

@@ -6,8 +6,8 @@

 # Fundamentals

-[Compiling NiCE From Scratch](https://sourceforge.net/p/niceproject/docs/Compiling%20NiCE%20From%20Scratch/) - Detailed build instructions for NiCE.  
-[Development Process and Guidelines](https://sourceforge.net/p/niceproject/docs/Development%20Process%20and%20Guidelines/) - How we "make it do what it do".  
+[Compiling NiCE From Scratch](Compiling NiCE From Scratch) - Detailed build instructions for NiCE.  
+[Development Process and Guidelines](Development Process and Guidelines) - How we "make it do what it do".  

 # Tutorials

@@ -15,20 +15,19 @@
 [Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers](Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers)  
 [Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in](Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in)  
 [Your First Plug-in Part 4: Extending your plug-in to generate input files](Your First Plug-in Part 4: Extending your plug-in to generate input files)  
-[Creating a NiCE XML File From Schema](https://sourceforge.net/p/niceproject/docs/Creating%20a%20NiCE%20XML%20File%20From%20Schema/) - A Tutorial for creating XML files with the a provided schema file for NiCE.  
-[Building_NiCE_I/O] - A tutorial for building NiCE I/O from source.   
+[Creating a NiCE XML File From Schema](Creating a NiCE XML File From Schema) - A Tutorial for creating XML files with the a provided schema file for NiCE.     

-[Java Fundamentals](https://sourceforge.net/p/niceproject/docs/Java_Fundamentals/) - Information on basic and advanced features of Java   
-[Creating OSGi Bundles from 3rd Party JARs](https://sourceforge.net/p/niceproject/docs/Creating%20OSGi%20Bundles%20from%203rd%20Party%20JARs/) - Information on creating OSGi bundles based on pre-existing Java .jar files.   
+[Java Fundamentals](Java Fundamentals) - Information on basic and advanced features of Java   
+[Creating OSGi Bundles from 3rd Party JARs](Creating OSGi Bundles from 3rd Party JARs) - Information on creating OSGi bundles based on pre-existing Java .jar files.   

 # Documentation

 Here are links to some good articles on pieces of NiCE that are still in development. Many of the pieces discussed are also in active development, so be warned: "Here there be dragons!" 

-[Algorithms for Clustering data](https://sourceforge.net/p/niceproject/docs/Algorithms%20for%20Clustering%20data/) - This details the algorithms used to cluster the nuclear reactor simulation data.  
-[Anomaly Detection Tool Test Cases](https://sourceforge.net/p/niceproject/docs/Anomaly%20Detection%20Tool%20Test%20Cases/) - Details of the test cases use for clustering algorithm.  
-[Basic Statistical Analysis of LWR Pin Power Data](https://sourceforge.net/p/niceproject/docs/Basic%20Statistical%20Analysis%20of%20LWR%20Pin%20Power%20Data/) - Details concerning basic statistical analysis of LWR pin power dataset comparisons.  
-[Clustering with Hadoop](https://sourceforge.net/p/niceproject/docs/Clustering%20with%20Hadoop/) - Data analysis with large scale nuclear simulation data.  
+[Algorithms for Clustering data](Algorithms for Clustering data) - This details the algorithms used to cluster the nuclear reactor simulation data.  
+[Anomaly Detection Tool Test Cases](Anomaly Detection Tool Test Cases) - Details of the test cases use for clustering algorithm.  
+[Basic Statistical Analysis of LWR Pin Power Data](Basic Statistical Analysis of LWR Pin Power Data) - Details concerning basic statistical analysis of LWR pin power dataset comparisons.  
+[Clustering with Hadoop](Clustering with Hadoop) - Data analysis with large scale nuclear simulation data.  
 [Eclipse Icons](Eclipse Icons) - We use these icons for NiCE.  
 [Enabling Real-time Simulation Updates with NiCEUpdater](Enabling Real-time Simulation Updates with NiCEUpdater) - Details on how to build and utilize the NiCEUpdater library.  
 [Javadoc](http://niceproject.sourceforge.net/javadoc) \- The JavaDoc reference manual for NiCE.  
@@ -37,28 +36,28 @@

 ## NiCE's Data Structures

-[About NiCE Data Structures](https://sourceforge.net/p/niceproject/docs/About%20NiCE%20Data%20Structures/) - A brief description of each of the more commonly used NiCE data structures and their purpose.   
-[CAEBAT](https://sourceforge.net/p/niceproject/docs/CAEBAT/) - Description of the structure and usage of CAEBAT.  
-[Data Structures in NiCE](https://sourceforge.net/p/niceproject/docs/Data%20Structures%20in%20NiCE/) - Documentation on NiCE's data structures.  
-[Geometry Editor](https://sourceforge.net/p/niceproject/docs/Geometry%20Editor/) - A partial list of features and requirements for the NiCE Geometry Editor.  
+[About NiCE Data Structures](About NiCE Data Structures) - A brief description of each of the more commonly used NiCE data structures and their purpose.   
+[CAEBAT](CAEBAT) - Description of the structure and usage of CAEBAT.  
+[Data Structures in NiCE](Data Structures in NiCE) - Documentation on NiCE's data structures.  
+[Geometry Editor](Geometry Editor) - A partial list of features and requirements for the NiCE Geometry Editor.  
 [Job Profile](Job Profile) - Information on creating Job Profiles in NiCE.   
-[Nek5000 Notes](https://sourceforge.net/p/niceproject/docs/Nek5000_Notes/) - Basic information on Nek5000, plugin development, and usage.   
-[NiCE LWR Object Model](https://sourceforge.net/p/niceproject/docs/NiCE_LWR_Object_Model/) - A description of the LWR model in NiCE.  
+[Nek5000 Notes](Nek5000 Notes) - Basic information on Nek5000, plugin development, and usage.   
+[NiCE LWR Object Model](NiCE LWR Object Model) - A description of the LWR model in NiCE.  
 [NiCE Painfully Simple Form](NiCE Painfully Simple Form) - Documentation on NiCE's "Painfully Simple Forms" and the associated file format.   
 [NiCE SFR Object Model](NiCE SFR Object Model) - A description of the SFR model in NiCE.  
 [Resources for TableViewer](Resources for TableViewer) - Documentation and references on TableViewer.   

 ## Additional Tools in NiCE

-[Better Exception Testing with JUNIT](https://sourceforge.net/p/niceproject/docs/Better%20Exception%20Testing%20with%20JUNIT/) - Tutorial for unit testing in JUNIT with expected exceptions.  
-[Challenges Using HDF5 and Java](https://sourceforge.net/p/niceproject/docs/Challenges%20Using%20HDF5%20and%20Java/) - Description of technical challenges and their solutions using HDF5 and Java.  
-[JAXB in NiCE](https://sourceforge.net/p/niceproject/docs/JAXB%20in%20NiCE/) - Details on using JAXB in NiCE.   
+[Better Exception Testing with JUNIT](Better Exception Testing with JUNIT) - Tutorial for unit testing in JUNIT with expected exceptions.  
+[Challenges Using HDF5 and Java](Challenges Using HDF5 and Java) - Description of technical challenges and their solutions using HDF5 and Java.  
+[JAXB in NiCE](JAXB in NiCE) - Details on using JAXB in NiCE.   
 [NiCE and HDF5](NiCE and HDF5) - Provides a basic explanation of HDF5 in NiCE.   
-[NiCE-VR](https://sourceforge.net/p/niceproject/docs/NiCE-VR/) - Information on NiCE's support for Virtual Reality environments.  
+[NiCE-VR](NiCE-VR) - Information on NiCE's support for Virtual Reality environments.  
 [Persistence in NiCE](Persistence in NiCE) - Article discussing various database connections and XML Parsing in NiCE.   
 [Replacing the jME3 Bundle in NiCE](Replacing the jME3 Bundle in NiCE) - Instructions for replacing the jars responsible for rendering 3d geometry in NiCE.   
 [Using VisIt in NiCE](Using VisIt in NiCE) - Details on using the VisIt Java API as an OSGi bundle and the VisItAnalysisTools plugin in NiCE.

 # Miscellaneous

-[Lost Boys](https://sourceforge.net/p/niceproject/docs/Lost%20Boys/) - A collection of links to articles that are either no longer relevant or in dire need of revision. 
+[Lost Boys](Lost Boys) - A collection of links to articles that are either no longer relevant or in dire need of revision.

Developer Documentation modified by Dasha

Dasha — Wed, 25 Jun 2014 14:29:24 -0000

--- v13
+++ v14
@@ -1,4 +1,4 @@
-This page is for programmers who would like to know the internal workings of NiCE and/or intend to modify the code. For regular users, the [Main Page](https://sourceforge.net/p/niceproject/docs/Main_Page/) would be more helpful. 
+This page is for programmers who would like to know the internal workings of NiCE and/or intend to modify the code. For regular users, the [Main Page](https://sourceforge.net/p/niceproject/docs/Main%20Page/) would be more helpful.

 **Table of Contents**

@@ -11,15 +11,15 @@

 # Tutorials

-[Your First Plug-in Part 1: Extending NiCE with custom Items](https://sourceforge.net/p/niceproject/docs/Your_First_Plug-in_Part_1:_Extending_NiCE_with_custom_%22Items%22/)  
-[Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers](https://sourceforge.net/p/niceproject/docs/Your_First_Plug-in_Part_2:_Using_the_Job_Profile_Editor_to_create_Job_Launchers/)  
-[Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in](https://sourceforge.net/p/niceproject/docs/Your_First_Plug-in_Part_3:_Creating_a_Java-based_Job_Launcher_with_an_OSGi_NiCE_plug-in/)  
-[Your First Plug-in Part 4: Extending your plug-in to generate input files](https://sourceforge.net/p/niceproject/docs/Your_First_Plug-in_Part_4:_Extending_your_plug-in_to_generate_input_files/)  
-[Creating a NiCE XML File From Schema](https://sourceforge.net/p/niceproject/docs/Creating_a_NiCE_XML_File_From_Schema/) - A Tutorial for creating XML files with the a provided schema file for NiCE.  
+[Your First Plug-in Part 1: Extending NiCE with custom Items](Your First Plug-in Part 1: Extending NiCE with custom Items)  
+[Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers](Your First Plug-in Part 2: Using the Job Profile Editor to create Job Launchers)  
+[Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in](Your First Plug-in Part 3: Creating a Java-based Job Launcher with an OSGi NiCE plug-in)  
+[Your First Plug-in Part 4: Extending your plug-in to generate input files](Your First Plug-in Part 4: Extending your plug-in to generate input files)  
+[Creating a NiCE XML File From Schema](https://sourceforge.net/p/niceproject/docs/Creating%20a%20NiCE%20XML%20File%20From%20Schema/) - A Tutorial for creating XML files with the a provided schema file for NiCE.  
 [Building_NiCE_I/O] - A tutorial for building NiCE I/O from source.   

 [Java Fundamentals](https://sourceforge.net/p/niceproject/docs/Java_Fundamentals/) - Information on basic and advanced features of Java   
-[Creating OSGi Bundles from 3rd Party JARs](https://sourceforge.net/p/niceproject/docs/Creating_OSGi_Bundles_from_3rd_Party_JARs/) - Information on creating OSGi bundles based on pre-existing Java .jar files.   
+[Creating OSGi Bundles from 3rd Party JARs](https://sourceforge.net/p/niceproject/docs/Creating%20OSGi%20Bundles%20from%203rd%20Party%20JARs/) - Information on creating OSGi bundles based on pre-existing Java .jar files.   

 # Documentation

@@ -29,11 +29,11 @@
 [Anomaly Detection Tool Test Cases](https://sourceforge.net/p/niceproject/docs/Anomaly%20Detection%20Tool%20Test%20Cases/) - Details of the test cases use for clustering algorithm.  
 [Basic Statistical Analysis of LWR Pin Power Data](https://sourceforge.net/p/niceproject/docs/Basic%20Statistical%20Analysis%20of%20LWR%20Pin%20Power%20Data/) - Details concerning basic statistical analysis of LWR pin power dataset comparisons.  
 [Clustering with Hadoop](https://sourceforge.net/p/niceproject/docs/Clustering%20with%20Hadoop/) - Data analysis with large scale nuclear simulation data.  
-[Eclipse Icons](https://sourceforge.net/p/niceproject/docs/Eclipse_Icons/) - We use these icons for NiCE.  
-[Enabling Real-time Simulation Updates with NiCEUpdater](https://sourceforge.net/p/niceproject/docs/Enabling_Real-time_Simulation_Updates_with_NiCEUpdater/) - Details on how to build and utilize the NiCEUpdater library.  
+[Eclipse Icons](Eclipse Icons) - We use these icons for NiCE.  
+[Enabling Real-time Simulation Updates with NiCEUpdater](Enabling Real-time Simulation Updates with NiCEUpdater) - Details on how to build and utilize the NiCEUpdater library.  
 [Javadoc](http://niceproject.sourceforge.net/javadoc) \- The JavaDoc reference manual for NiCE.  
-[Migrating to Eclipse 4](https://sourceforge.net/p/niceproject/docs/Migrating_to_Eclipse_4/) - Details on the migration from Eclipse 3.7.2 to Eclipse 4.2.2.  
-[References for KDD work](https://sourceforge.net/p/niceproject/docs/References_for_KDD_work/) - Detailed list of the references for KDD work, including the work on Map-Reduce.  
+[Migrating to Eclipse 4](Migrating to Eclipse 4) - Details on the migration from Eclipse 3.7.2 to Eclipse 4.2.2.  
+[References for KDD work](References for KDD work) - Detailed list of the references for KDD work, including the work on Map-Reduce.  

 ## NiCE's Data Structures

@@ -41,23 +41,23 @@
 [CAEBAT](https://sourceforge.net/p/niceproject/docs/CAEBAT/) - Description of the structure and usage of CAEBAT.  
 [Data Structures in NiCE](https://sourceforge.net/p/niceproject/docs/Data%20Structures%20in%20NiCE/) - Documentation on NiCE's data structures.  
 [Geometry Editor](https://sourceforge.net/p/niceproject/docs/Geometry%20Editor/) - A partial list of features and requirements for the NiCE Geometry Editor.  
-[Job Profile](https://sourceforge.net/p/niceproject/docs/Job_Profile/) - Information on creating Job Profiles in NiCE.   
+[Job Profile](Job Profile) - Information on creating Job Profiles in NiCE.   
 [Nek5000 Notes](https://sourceforge.net/p/niceproject/docs/Nek5000_Notes/) - Basic information on Nek5000, plugin development, and usage.   
 [NiCE LWR Object Model](https://sourceforge.net/p/niceproject/docs/NiCE_LWR_Object_Model/) - A description of the LWR model in NiCE.  
-[NiCE Painfully Simple Form](https://sourceforge.net/p/niceproject/docs/NiCE_Painfully_Simple_Form/) - Documentation on NiCE's "Painfully Simple Forms" and the associated file format.   
-[NiCE SFR Object Model](https://sourceforge.net/p/niceproject/docs/NiCE_SFR_Object_Model/) - A description of the SFR model in NiCE.  
-[Resources for TableViewer](https://sourceforge.net/p/niceproject/docs/Resources_for_TableViewer/) - Documentation and references on TableViewer.   
+[NiCE Painfully Simple Form](NiCE Painfully Simple Form) - Documentation on NiCE's "Painfully Simple Forms" and the associated file format.   
+[NiCE SFR Object Model](NiCE SFR Object Model) - A description of the SFR model in NiCE.  
+[Resources for TableViewer](Resources for TableViewer) - Documentation and references on TableViewer.   

 ## Additional Tools in NiCE

 [Better Exception Testing with JUNIT](https://sourceforge.net/p/niceproject/docs/Better%20Exception%20Testing%20with%20JUNIT/) - Tutorial for unit testing in JUNIT with expected exceptions.  
 [Challenges Using HDF5 and Java](https://sourceforge.net/p/niceproject/docs/Challenges%20Using%20HDF5%20and%20Java/) - Description of technical challenges and their solutions using HDF5 and Java.  
 [JAXB in NiCE](https://sourceforge.net/p/niceproject/docs/JAXB%20in%20NiCE/) - Details on using JAXB in NiCE.   
-[NiCE and HDF5](https://sourceforge.net/p/niceproject/docs/NiCE_and_HDF5/) - Provides a basic explanation of HDF5 in NiCE.   
+[NiCE and HDF5](NiCE and HDF5) - Provides a basic explanation of HDF5 in NiCE.   
 [NiCE-VR](https://sourceforge.net/p/niceproject/docs/NiCE-VR/) - Information on NiCE's support for Virtual Reality environments.  
-[Persistence in NiCE](https://sourceforge.net/p/niceproject/docs/Persistence_in_NiCE/) - Article discussing various database connections and XML Parsing in NiCE.   
-[Replacing the jME3 Bundle in NiCE](https://sourceforge.net/p/niceproject/docs/Replacing_the_jME3_Bundle_in_NiCE/) - Instructions for replacing the jars responsible for rendering 3d geometry in NiCE.   
-[Using VisIt in NiCE](https://sourceforge.net/p/niceproject/docs/Using_VisIt_in_NiCE/) - Details on using the VisIt Java API as an OSGi bundle and the VisItAnalysisTools plugin in NiCE.
+[Persistence in NiCE](Persistence in NiCE) - Article discussing various database connections and XML Parsing in NiCE.   
+[Replacing the jME3 Bundle in NiCE](Replacing the jME3 Bundle in NiCE) - Instructions for replacing the jars responsible for rendering 3d geometry in NiCE.   
+[Using VisIt in NiCE](Using VisIt in NiCE) - Details on using the VisIt Java API as an OSGi bundle and the VisItAnalysisTools plugin in NiCE.

 # Miscellaneous

Developer Documentation modified by Dasha

Dasha — Wed, 25 Jun 2014 13:22:45 -0000

--- v12
+++ v13
@@ -40,7 +40,7 @@
 [About NiCE Data Structures](https://sourceforge.net/p/niceproject/docs/About%20NiCE%20Data%20Structures/) - A brief description of each of the more commonly used NiCE data structures and their purpose.   
 [CAEBAT](https://sourceforge.net/p/niceproject/docs/CAEBAT/) - Description of the structure and usage of CAEBAT.  
 [Data Structures in NiCE](https://sourceforge.net/p/niceproject/docs/Data%20Structures%20in%20NiCE/) - Documentation on NiCE's data structures.  
-[Geometry Editor](https://sourceforge.net/p/niceproject/docs/Geometry_Editor/) - A partial list of features and requirements for the NiCE Geometry Editor.  
+[Geometry Editor](https://sourceforge.net/p/niceproject/docs/Geometry%20Editor/) - A partial list of features and requirements for the NiCE Geometry Editor.  
 [Job Profile](https://sourceforge.net/p/niceproject/docs/Job_Profile/) - Information on creating Job Profiles in NiCE.   
 [Nek5000 Notes](https://sourceforge.net/p/niceproject/docs/Nek5000_Notes/) - Basic information on Nek5000, plugin development, and usage.   
 [NiCE LWR Object Model](https://sourceforge.net/p/niceproject/docs/NiCE_LWR_Object_Model/) - A description of the LWR model in NiCE.  
@@ -51,8 +51,8 @@
 ## Additional Tools in NiCE

 [Better Exception Testing with JUNIT](https://sourceforge.net/p/niceproject/docs/Better%20Exception%20Testing%20with%20JUNIT/) - Tutorial for unit testing in JUNIT with expected exceptions.  
-[Challenges Using HDF5 and Java](https://sourceforge.net/p/niceproject/docs/Challenges_Using_HDF5_and_Java/) - Description of technical challenges and their solutions using HDF5 and Java.  
-[JAXB in NiCE](https://sourceforge.net/p/niceproject/docs/JAXB_in_NiCE/) - Details on using JAXB in NiCE.   
+[Challenges Using HDF5 and Java](https://sourceforge.net/p/niceproject/docs/Challenges%20Using%20HDF5%20and%20Java/) - Description of technical challenges and their solutions using HDF5 and Java.  
+[JAXB in NiCE](https://sourceforge.net/p/niceproject/docs/JAXB%20in%20NiCE/) - Details on using JAXB in NiCE.   
 [NiCE and HDF5](https://sourceforge.net/p/niceproject/docs/NiCE_and_HDF5/) - Provides a basic explanation of HDF5 in NiCE.   
 [NiCE-VR](https://sourceforge.net/p/niceproject/docs/NiCE-VR/) - Information on NiCE's support for Virtual Reality environments.  
 [Persistence in NiCE](https://sourceforge.net/p/niceproject/docs/Persistence_in_NiCE/) - Article discussing various database connections and XML Parsing in NiCE.   
@@ -61,4 +61,4 @@

 # Miscellaneous

-[Lost Boys](https://sourceforge.net/p/niceproject/docs/Lost_Boys/) - A collection of links to articles that are either no longer relevant or in dire need of revision. 
+[Lost Boys](https://sourceforge.net/p/niceproject/docs/Lost%20Boys/) - A collection of links to articles that are either no longer relevant or in dire need of revision.