I used the Eclipse+Plugin v3,3 for many years. Can't seem to get the run.bat to work in Win10. Error is:
Unrecognized option: --add-modules=ALL-MODULE-PATH
Error: Could not create the Java Virtual Machine.
Was told I need Java 11 but in Windows the latest is Java 8 update 301. Any suggestions on a tweak are appreciated.
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
From: Douglas Duane Rhoads
Sent: Wednesday, September 29, 2021 6:44 AM
To: '[ngsep:discussion] ' faq@discussion.ngsep.p.re.sourceforge.net
Subject: RE: [ngsep:discussion] Anyone successfully run the GUI in Win10?
I am confused on NGSEP4 for how to run the Variant Files Merge function. If I right click on a folder name I can choose Merge then specify the genome file, and output file, but can't figure out how to select multiple files. There is nothing in the NGSEP4 manual about this function. The function was very straightforward in NGSEP3.3
I am confused on NGSEP4 for how to run the Variant Files Merge function. If I right click on a folder name I can choose Merge then specify the genome file, and output file, but can't figure out how to select multiple files. There is nothing in the NGSEP4 manual about this function. The function was very straightforward in NGSEP3.3
I am not sure if you still have this issue. In the current version of NGSEP 4, once you right click the directory and select "Variant files Merge" you should see a file dialog in which you can select the VCF files that you wish to merge. Please let me know if you can see the dialog. We are currently checking different options to facilitate this and other functions where large numbers of files need to be processed.
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
I used the Eclipse+Plugin v3,3 for many years. Can't seem to get the run.bat to work in Win10. Error is:
Unrecognized option: --add-modules=ALL-MODULE-PATH
Error: Could not create the Java Virtual Machine.
Was told I need Java 11 but in Windows the latest is Java 8 update 301. Any suggestions on a tweak are appreciated.
Hi Douglas
Thanks for sharing your question through the forum. You can download java 11 for windows from the oracle web site: https://www.oracle.com/java/technologies/javase/jdk11-archive-downloads.html
Let me know if you still have issues running NGSEP after updating the JVM.
Thanks much. I did not appreciate that by Java 11 you meant the Java SE SDK 11. That has worked and the GUI is now running.
No problem. I am glad to know it is working now. Let us know any further issues running the interface
Never mind. I figured it out.
[cid:image001.jpg@01D7B4FD.9E1EE770]
From: Douglas Duane Rhoads
Sent: Wednesday, September 29, 2021 6:44 AM
To: '[ngsep:discussion] ' faq@discussion.ngsep.p.re.sourceforge.net
Subject: RE: [ngsep:discussion] Anyone successfully run the GUI in Win10?
I am confused on NGSEP4 for how to run the Variant Files Merge function. If I right click on a folder name I can choose Merge then specify the genome file, and output file, but can't figure out how to select multiple files. There is nothing in the NGSEP4 manual about this function. The function was very straightforward in NGSEP3.3
[cid:image001.jpg@01D7B4FD.9E1EE770]
From: Jorge Duitama jduitama@users.sourceforge.net<mailto:jduitama@users.sourceforge.net>
Sent: Friday, September 24, 2021 8:44 AM
To: [ngsep:discussion] faq@discussion.ngsep.p.re.sourceforge.net<mailto:faq@discussion.ngsep.p.re.sourceforge.net>
Subject: [ngsep:discussion] Anyone successfully run the GUI in Win10?
No problem. I am glad to know it is working now. Let us know any further issues running the interface
Anyone successfully run the GUI in Win10?https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsourceforge.net%2Fp%2Fngsep%2Fdiscussion%2Ffaq%2Fthread%2Fe38ee4c22b%2F%3Flimit%3D25%239191&data=04%7C01%7Cdrhoads%40uark.edu%7C8166ef63a4ca4f7881ea08d97f615554%7C79c742c4e61c4fa5be89a3cb566a80d1%7C0%7C0%7C637680878890767742%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=7hofjBSHh6rGbmr6fgM%2B82v%2FtA9XCHTJ3mSINQCPKOY%3D&reserved=0
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I am confused on NGSEP4 for how to run the Variant Files Merge function. If I right click on a folder name I can choose Merge then specify the genome file, and output file, but can't figure out how to select multiple files. There is nothing in the NGSEP4 manual about this function. The function was very straightforward in NGSEP3.3
[cid:image001.jpg@01D7B4FD.5504C320]
From: Jorge Duitama jduitama@users.sourceforge.net
Sent: Friday, September 24, 2021 8:44 AM
To: [ngsep:discussion] faq@discussion.ngsep.p.re.sourceforge.net
Subject: [ngsep:discussion] Anyone successfully run the GUI in Win10?
No problem. I am glad to know it is working now. Let us know any further issues running the interface
Anyone successfully run the GUI in Win10?https://nam11.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsourceforge.net%2Fp%2Fngsep%2Fdiscussion%2Ffaq%2Fthread%2Fe38ee4c22b%2F%3Flimit%3D25%239191&data=04%7C01%7Cdrhoads%40uark.edu%7C8166ef63a4ca4f7881ea08d97f615554%7C79c742c4e61c4fa5be89a3cb566a80d1%7C0%7C0%7C637680878890767742%7CUnknown%7CTWFpbGZsb3d8eyJWIjoiMC4wLjAwMDAiLCJQIjoiV2luMzIiLCJBTiI6Ik1haWwiLCJXVCI6Mn0%3D%7C3000&sdata=7hofjBSHh6rGbmr6fgM%2B82v%2FtA9XCHTJ3mSINQCPKOY%3D&reserved=0
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Hi Douglas
I am not sure if you still have this issue. In the current version of NGSEP 4, once you right click the directory and select "Variant files Merge" you should see a file dialog in which you can select the VCF files that you wish to merge. Please let me know if you can see the dialog. We are currently checking different options to facilitate this and other functions where large numbers of files need to be processed.