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Can this impute tetraploid genotype (VCF)

Hu Wang
2021-10-25
2021-10-26
  • Hu Wang

    Hu Wang - 2021-10-25

    Hello,

    Can this impute tetraploid missing genotypes?

    Thanks

     
  • Jorge Duitama

    Jorge Duitama - 2021-10-26

    Hi Hu

    Thanks for your interest in NGSEP. At this moment we do not have an implementation of the model for tetraploids. The diploid model may do reasonably well to impute homozygous/heterozygous genotypes but it definitely would not impute heterozygous allele dosages.

     
    • Hu Wang

      Hu Wang - 2021-10-26

      Great thanks,

      Hu

       

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