NGSEP Discussion

NGSEP (Next Generation Sequencing Experience Platform)

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Frequently Asked Questions

Problems, Question, Issues.

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Topic	Posts	Views	Last Post
NGSEP 5.x manual By Anonymous on Wed Feb 28, 2024 08:44 AM	3	107	By Jorge Duitama on Fri Aug 16, 2024 03:17 PM
GUI explorer error By Anonymous on Fri Oct 20, 2023 06:26 AM	4	77	By Jorge Duitama on Thu Oct 26, 2023 11:43 AM
MultisampleVariantsDetector and VCF output By Xavier Argout on Tue Sep 05, 2023 09:10 AM	7	271	By Xavier Argout on Wed Sep 06, 2023 02:01 PM
ReadsAligner and MultisampleVariantsDetector By Diego Almansa-Villa on Thu Aug 31, 2023 05:49 PM	2	125	By Jorge Duitama on Fri Sep 01, 2023 11:25 AM
Kmer error By Diego Almansa-Villa on Fri Jun 16, 2023 04:02 PM	4	85	By Jorge Duitama on Thu Jun 29, 2023 05:17 PM
Compile error By Anonymous on Fri May 19, 2023 06:54 PM	4	101	By Diego Almansa-Villa on Mon Jun 05, 2023 09:24 PM
Issue with font in GUI By Anonymous on Thu Mar 31, 2022 08:39 AM	6	121	By Jorge Duitama on Thu Feb 09, 2023 11:32 PM
Obtain ADP for SNVs By Anonymous on Wed Nov 16, 2022 03:29 PM	10	150	By Jorge Duitama on Wed Dec 21, 2022 01:36 AM
SNV calling from polyploid complex data By Anonymous on Mon Dec 12, 2022 08:04 AM	2	45	By Jorge Duitama on Tue Dec 13, 2022 12:09 PM
bed file for calling variants By Anonymous on Fri Jul 29, 2022 08:12 PM	8	100	By Jorge Duitama on Mon Aug 29, 2022 12:02 PM
Inferring GBS data association to phenotypic traits By Anonymous on Fri Jun 17, 2022 02:52 PM	4	59	By Jorge Duitama on Tue Jun 21, 2022 01:31 PM
Variant calling parallelization By Anonymous on Thu Apr 28, 2022 08:29 AM	5	166	By Anonymous on Wed May 25, 2022 03:48 AM
de-novo analysis of GBS reads By Anonymous on Wed Apr 06, 2022 12:59 PM	2	111	By Jorge Duitama on Wed Apr 06, 2022 10:43 PM
SingleSampleVariantsDetector By Mahmoud Bassyouni on Wed Jan 05, 2022 10:46 AM	8	268	By Mahmoud Bassyouni on Thu Jan 13, 2022 12:03 PM
NGSEPcore Do the Options have a specific order By Douglas Rhoads on Sat Jan 08, 2022 11:44 AM	4	153	By Jorge Duitama on Mon Jan 10, 2022 09:14 PM
Convert sorted indexed bam files to vcf By Anonymous on Wed Sep 29, 2021 03:17 PM	34	698	By Jorge Duitama on Mon Nov 08, 2021 09:51 PM
VCFAnnotate issue By Anonymous on Wed Oct 20, 2021 02:38 PM	15	186	By Jorge Duitama on Wed Nov 03, 2021 01:19 AM
Can this impute tetraploid genotype (VCF) By Hu Wang on Mon Oct 25, 2021 04:47 PM	3	75	By Hu Wang on Tue Oct 26, 2021 12:36 AM
Java Problems By Anonymous on Fri Jun 15, 2018 10:11 AM	19	569	By Anonymous on Tue Oct 05, 2021 09:17 PM
GBS de novo questions By Anonymous on Mon Aug 30, 2021 03:13 PM	2	97	By Jorge Duitama on Mon Oct 04, 2021 12:49 PM
Anyone successfully run the GUI in Win10? By Douglas Rhoads on Thu Sep 23, 2021 02:00 PM	7	97	By Jorge Duitama on Wed Sep 29, 2021 03:47 PM
Updating scripts By Anonymous on Fri Sep 03, 2021 11:01 PM	3	74	By Jorge Duitama on Mon Sep 06, 2021 11:39 PM
VCFConverter for polyploid / mixed-polyploid data By Anonymous on Thu May 20, 2021 07:19 AM	4	688	By Jorge Duitama on Mon Jun 07, 2021 10:50 PM
Demultiplexing but no quality control? By Anonymous on Tue Dec 29, 2020 05:38 PM	2	155	By Jorge Duitama on Thu Dec 31, 2020 01:10 AM
'0/1' genotypes a vcf generated with SingleSampleVariantsDetector a ... By Anonymous on Thu Nov 12, 2020 09:10 PM	6	146	By Jorge Duitama on Mon Dec 14, 2020 02:03 AM

1 2 3 > >> (Page 1 of 3)

NGSEP Discussion

NGSEP (Next Generation Sequencing Experience Platform)

Forums

Help

Frequently Asked Questions

NGSEP 5.x manual

GUI explorer error

MultisampleVariantsDetector and VCF output

ReadsAligner and MultisampleVariantsDetector

Kmer error

Compile error

Issue with font in GUI

Obtain ADP for SNVs

SNV calling from polyploid complex data

bed file for calling variants

Inferring GBS data association to phenotypic traits

Variant calling parallelization

de-novo analysis of GBS reads

SingleSampleVariantsDetector

NGSEPcore Do the Options have a specific order

Convert sorted indexed bam files to vcf

VCFAnnotate issue

Can this impute tetraploid genotype (VCF)

Java Problems

GBS de novo questions

Anyone successfully run the GUI in Win10?

Updating scripts

VCFConverter for polyploid / mixed-polyploid data

Demultiplexing but no quality control?

'0/1' genotypes a vcf generated with SingleSampleVariantsDetector a ...

NGSEP Discussion

NGSEP (Next Generation Sequencing Experience Platform)

Forums

Help

Frequently Asked Questions document.SUBSCRIPTION_OPTIONS = { "thing": "forum", "subscribed": false, "url": "subscribe_to_forum", "icon": { "css": "fa fa-envelope-o" } };

Frequently Asked Questions