CIMS Code

Crosslinking induced mutation site analysis

Brought to you by: sebweyn, zhangchaolin

Tree [c8b31a] master /

History

HTTPS git://

HTTPS access

File	Date	Author	Commit
CIMS.pl	2014-12-04	Chaolin Zhang	[85de44] improved computational efficiency/memory usage ...
COPYING	2013-08-15	Chaolin Zhang	[ee10a0] add new scripts
README	2013-08-15	Chaolin Zhang	[ee10a0] add new scripts
bedExt.pl	2014-05-05	Chaolin Zhang	[a7d71e] added several scripts required for CITS analysis
bedUniq.pl	2014-05-05	Chaolin Zhang	[a7d71e] added several scripts required for CITS analysis
combineTranscripts.pl	2014-05-05	Chaolin Zhang	[a7d71e] added several scripts required for CITS analysis
extractPeak.pl	2013-08-15	Chaolin Zhang	[ee10a0] add new scripts
fasta2collapse.pl	2012-12-14	Chaolin Zhang %Zhang	[451803] fix of typo in usage info
fastq_filter.pl	2014-12-04	Chaolin Zhang	[85de44] improved computational efficiency/memory usage ...
gene2ExonIntron.pl	2014-12-04	Chaolin Zhang	[85de44] improved computational efficiency/memory usage ...
joinWrapper.py	2013-08-15	Chaolin Zhang	[ee10a0] add new scripts
novoalign2bed.pl	2012-12-14	Chaolin Zhang %Zhang	[0c95bd] initial release of CIMS
simulateCLIPmismatch.pl	2012-12-14	Chaolin Zhang %Zhang	[0c95bd] initial release of CIMS
stripBarcode.pl	2014-05-05	Chaolin Zhang	[b1790e] add script for CITS analysis
tag2cluster.pl	2013-08-15	Chaolin Zhang	[ee10a0] add new scripts
tag2collapse.pl	2015-03-10	Chaolin Zhang	[8d4556] improved memory usage and speed in tag collapsi...
tag2peak.pl	2015-03-10	Chaolin Zhang	[8d4556] improved memory usage and speed in tag collapsi...
tag2profile.pl	2014-12-04	Chaolin Zhang	[85de44] improved computational efficiency/memory usage ...
tagoverlap.pl	2015-03-10	Chaolin Zhang	[8d4556] improved memory usage and speed in tag collapsi...

Read Me

For document, see http://zhanglab.c2b2.columbia.edu/index.php/CIMS