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#20 Error "Modification of non-creatable array value attempted"

New
nobody
None
Medium
Defect
2017-03-10
2015-10-20
Santiago
No

Hi Aaron,

The following error appeared while trying to perform an assembly using version 20150522:

Modification of non-creatable array value attempted, subscript -1 at /home/adminrig/Software/a5pipeline-20150522M/bin/a5_pipeline.pl line 832, <FASTQ> line 77.

I'm attaching the full assembly log. Let me know if you need anything else to review this error.

Thank you very much in advance.

Sincerely,
Santiago

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Related

Tickets: #20

Discussion

  • Aaron Darling

    Aaron Darling - 2015-10-21

    Thanks for the log, Santiago. It looks like there was a problem parsing the assembly file inside the correct_basecalls() function. Can you attach or send the first few lines of the MR.contigs.fasta file so I can understand why it may not be getting parsed?

     
    • Santiago

      Santiago - 2015-12-11

      Hi Aaron,
      I have missed this email and found it today.
      I'm attaching the first 10 lines of the fasta file. Please, let me know if this is enough or you need more.
      Thank you very much.

      On Wednesday, October 21, 2015 1:16 AM, Aaron Darling <koadman@users.sf.net> wrote:
      

      Thanks for the log, Santiago. It looks like there was a problem parsing the assembly file inside the correct_basecalls() function. Can you attach or send the first few lines of the MR.contigs.fasta file so I can understand why it may not be getting parsed? [tickets:#20] Error "Modification of non-creatable array value attempted"Status: New
      Created: Tue Oct 20, 2015 03:05 PM UTC by Santiago
      Last Updated: Tue Oct 20, 2015 03:05 PM UTC
      Owner: nobody
      Attachments:
      - assembly_a5pipeline.filtered.all.log (5.1 kB; text/x-log)
      Hi Aaron,The following error appeared while trying to perform an assembly using version 20150522:Modification of non-creatable array value attempted, subscript -1 at /home/adminrig/Software/a5pipeline-20150522M/bin/a5_pipeline.pl line 832, <FASTQ> line 77.I'm attaching the full assembly log. Let me know if you need anything else to review this error.Thank you very much in advance.Sincerely,
      SantiagoSent from sourceforge.net because you indicated interest in https://sourceforge.net/p/ngopt/tickets/20/To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/

       

      Related

      Tickets: #20

  • rmagalhaes

    rmagalhaes - 2017-03-10

    Please, any news about this ticket. I have the same problem here.

     

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