Error "Modification of non-creatable array value attempted"
de novo assembly & analysis of Illumina sequence data
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Hi Aaron,
The following error appeared while trying to perform an assembly using version 20150522:
Modification of non-creatable array value attempted, subscript -1 at /home/adminrig/Software/a5pipeline-20150522M/bin/a5_pipeline.pl line 832, <FASTQ> line 77.
I'm attaching the full assembly log. Let me know if you need anything else to review this error.
Thank you very much in advance.
Sincerely,
Santiago
Thanks for the log, Santiago. It looks like there was a problem parsing the assembly file inside the correct_basecalls() function. Can you attach or send the first few lines of the MR.contigs.fasta file so I can understand why it may not be getting parsed?
Hi Aaron,
I have missed this email and found it today.
I'm attaching the first 10 lines of the fasta file. Please, let me know if this is enough or you need more.
Thank you very much.
Thanks for the log, Santiago. It looks like there was a problem parsing the assembly file inside the correct_basecalls() function. Can you attach or send the first few lines of the MR.contigs.fasta file so I can understand why it may not be getting parsed? [tickets:#20] Error "Modification of non-creatable array value attempted"Status: New
Created: Tue Oct 20, 2015 03:05 PM UTC by Santiago
Last Updated: Tue Oct 20, 2015 03:05 PM UTC
Owner: nobody
Attachments:
- assembly_a5pipeline.filtered.all.log (5.1 kB; text/x-log)
Hi Aaron,The following error appeared while trying to perform an assembly using version 20150522:Modification of non-creatable array value attempted, subscript -1 at /home/adminrig/Software/a5pipeline-20150522M/bin/a5_pipeline.pl line 832, <FASTQ> line 77.I'm attaching the full assembly log. Let me know if you need anything else to review this error.Thank you very much in advance.Sincerely,
SantiagoSent from sourceforge.net because you indicated interest in https://sourceforge.net/p/ngopt/tickets/20/To unsubscribe from further messages, please visit https://sourceforge.net/auth/subscriptions/
Related
Tickets: #20
Please, any news about this ticket. I have the same problem here.