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# Summary▾ Milestone▾ Status▾ Owner▾ Created▾ Updated▾ Votes▾
24 Error: could not open ../assembly.out.pp.bwt for read None New 2018-02-13 2018-04-10 2  
23 Unpaired reads are not being used None New 2016-11-25 2016-11-25 0  
22 Assembly returns error, says reads are unpaired when they are None New 2016-09-30 2016-09-30 0  
21 Permission denied when using A5 for MiSeq on university supercomputer None New 2016-05-02 2016-05-03 0  
20 Error "Modification of non-creatable array value attempted" None New 2015-10-20 2017-03-10 0  
19 sh: line 1: 4952 Segmentation fault: 11 None New 2015-05-11 2015-09-06 0  
18 Errors on the A5qc.jar command None New 2015-04-20 2016-03-14 0  
17 Error in detecting missasemblies None New Aaron Darling 2014-11-19 2014-11-20 0  
16 Can't find error corrected reads DDRxxxxxx.ec.fastq at /opt/ngopt/a5_miseq_linux_20140604/bin/a5_pipeline.pl line 253 None New 2014-06-12 2015-11-13 0  
15 Can't locate getopts.pl in @INC -> no scaffolds created None New 2014-03-21 2014-08-17 1  
14 metagenome flag still attempts to error correct None New 2014-02-18 2014-02-18 1  
13 A5 assembly stats None New 2014-01-21 2014-01-21 1  
12 SGA Error None New 2013-11-22 2013-11-22 1  
11 Error: read M00313:80:000000000-A4ALA:1:1101:16379:1657 has out of range quality values. None New 2013-08-30 2013-11-01 1  
10 Error preprocessing with SGA? None New 2013-07-25 2014-02-24 1  
9 Input Data Compatibility - Reference Genome + Illumina None New 2013-06-26 2013-06-26 1  
8 Too many scaffolds None New 2013-05-05 2013-07-02 2  
7 sh: line 1: 97820 Abort trap: 6 None New 2013-05-02 2013-07-02 2  
6 Long reads cause IDBA to crash None New 2013-02-12 2013-12-19 7  
5 sub get_phred64 bug None New 2012-10-31 2013-01-03 5  
4 insert size estimation bug None New 2012-10-30 2012-10-30 1  
3 insert size error? None New 2012-10-07 2012-10-07 1  
2 Repair compile target generates errors None New 2012-06-27 2012-06-27 1  
1 Hello, I'm trying to use the A5 pipeline. I've installed it in my bin folder, but it appears as a blinking filename, highlighted in red. How do I rectify this? None New 2011-11-30 2011-11-30 1  
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