This is a pipeline that is used to store an EST or Genome assembly information including reads and their alignment in a mysql database. Further more, it provides a set of scripts to mine SNPs and other statistics from the assembly.

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Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

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Additional Project Details

Intended Audience

Science/Research

Programming Language

Groovy, Java

Database Environment

MySQL

Related Categories

Groovy Bio-Informatics Software, Java Bio-Informatics Software

Registered

2011-03-02
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