[Nemo2-user] Fwd: Problem with .dat file

[Tom S. <t.l...@gm...>]

Dear Dr. Guillaume,

As a follow-up to this, I have now managed to get Nemo to recognise the
population file by registering it as .txt, and to get breed_wolbachia to
work by setting all the breeding and Wolbachia parameters.

However, what I really want to do is to assign Wolbachia frequencies on a
patch-by-patch basis, so that some patches start with the infection and
others do not. It seems like this option should be accommodated by
Nemo2.3.45, but it doesn't seem like I can load Wolbachia infection data
from a population file, like I could for age/sex/etc.  Is a patch-by-patch
infection rate able to handled by Nemo?

This would be a great feature as it would mean one could model the sweep of
Wolbachia through a population.

Regards
Tom Schmidt



---------- Forwarded message ----------
From: Tom Schmidt <t.l...@gm...>
Date: Thu, Jul 14, 2016 at 11:16 AM
Subject: Problem with .dat file
To: nem...@li...


Dear Dr Guillaume,

I am looking forward to using Nemo2.3.45 for the first time to analyse a
spread of disease-blocking Wolbachia, which would be part of a substantial
part of my research.

I've put together all my files to run in lubuntu, but I consistently get
the error message: "no file reader exists with source file extension .dat"

I realise someone also asked this question before, but I've found no
solution to my problem. As it is my .init file and its contents seem to be
recognised but the program won't locate/read/accept the .dat file I have in
the same location.

All that I need the .dat file for is to specify initial Wolbachia infection
rates on a patch-by-patch basis. Is there a way to do this in the .init
file itself, as if there is I can dispense with the .dat file?

Additionally, I am using breed_wolbachia as a LCE, but it doesn't seem to
be recognised by the program. When I just input "breed", it is recognised
(but the program still stops when it can't find the .dat file).

I look forward to hearing from you. I ahve attached my input files, and a
copy of the output reading, if it may help in your answering my query. I
thank you in advance for any help you're able to give me.

Regards
Tom Schmidt
University of Melbourne