[Nemo2-user] linkage blocks

[<neh...@lo...>]

Hi,


My name is Neha Angal, I am a graduate student in biological anthropological. I'm interested in running some simulations of the impacts of drift upon LD during a range expansion. I want to set up linkage block where the haplotype has both neutral and deleterious markers- as in neutral markers surrounding a deleterious marker. I was reading through the manual and it appears that this may be possible? Is there any way to confirm that the markers are occurring in the same linkage block? And is it possible to output the genetic map for each simulation and replicate?



Thanks so much!


Neha



Neha Angal
Graduate Research Assistant
Masters Student
Anthropology Department
University of Louisville