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From: Douine, E. D. <ED...@me...> - 2018-05-23 22:07:07
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Hi everyone, Cynthia mentioned that the nights that she cleans the Nelson lab, the door isn’t always locked. Please make sure to lock the doors when you leave after 5pm if no one else is here. Thanks Best Emilie DOUINE-BARTHELEMY, MS Study coordinator / SRA II Lab of Prof. Stanley Nelson Dept of Human Genetics 695 Charles E. Young Drive Gonda 5506 Los Angeles, CA 90095 Phone number: 310 267 2416 Fax: 310-206-5699 ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Douine, E. D. <ED...@me...> - 2018-05-02 18:04:08
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Begin forwarded message: From: "Bot, Merel H." <MB...@me...<mailto:MB...@me...>> Subject: Human Genetics Coffee&Cookie Hour THIS FRIDAY May 4th! Date: April 30, 2018 at 11:55:20 AM PDT To: "Dell'Angelica, Esteban C." <ede...@me...<mailto:ede...@me...>>, "Suchard, Marc" <msu...@uc...<mailto:msu...@uc...>>, "Fan, Guoping" <GF...@me...<mailto:GF...@me...>>, "anq...@gm...<mailto:anq...@gm...>" <anq...@gm...<mailto:anq...@gm...>>, "Martinez, Julian A." <Jul...@me...<mailto:Jul...@me...>>, "Beigneux, Anne" <ABe...@me...<mailto:ABe...@me...>>, "sn...@uc...<mailto:sn...@uc...>" <sn...@uc...<mailto:sn...@uc...>>, "Reue, Karen" <KR...@me...<mailto:KR...@me...>>, "Ong, Jessica (Medical Student)" <JR...@me...<mailto:JR...@me...>> Hi everybody! We have started a monthly coffee&cookie hour for the people in Human Genetics (see attached flyer). Unfortunately we don’t have a full list of emails, so we are hoping that you could forward this invitation to your lab members and have them sign up for our mailing list!! Signing up can be done by following this link: https://groups.google.com/a/lists.ucla.edu/forum/#!forum/hg-social/join We hope to see you this Friday! Please sign up for the mailing list! Merel Bot MSc. | Assistant Project Scientist | UCLA Center for Neurobehavioral Genetics | Gonda Center - Room 4335| 695 Charles E. Young Drive South | Los Angeles, CA 90095 | Tel: (310) 206 5321 ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Douine, E. D. <ED...@me...> - 2018-03-12 16:51:09
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________________________________ From: Bruin Allies for Duchenne <bru...@gm...> Sent: Monday, March 12, 2018 9:31 AM Subject: March Madness bracket fundraiser, due 3/15 9am Hello everyone, March Madness is here! The Bruin Allies for Duchenne (B.A.D.) at UCLA is hosting a March Madness Pool Fundraiser so we can continue to raise awareness for Duchenne muscular dystrophy, a fatal genetic muscle wasting disorder. In order to enter the pool, a $5 minimum donation fee is requested. If your bracket scores within the top three you will win one of our prizes- an Amazon gift card and B.A.D. swag! Attached is the bracket, please fill it out and email it back to us (bru...@gm...<mailto:bru...@gm...>) or give it to one of our members by 3/15 at 9am PST. For your convenience, the bracket is a fillable PDF. Donations can be given by cash to our members or venmo to @courtney-young-22. Anyone is welcome to enter so please pass it on to your friends and family! Thank you so much for your support of B.A.D. and Duchenne muscular dystrophy! Best, The Bruin Allies for Duchenne leadership -- Email: bru...@gm...<mailto:bru...@gm...> Facebook: https://<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.facebook.com_BruinsAlliesforDuchenne&d=DwMFaQ&c=UXmaowRpu5bLSLEQRunJ2z-YIUZuUoa9Rw_x449Hd_Y&r=GbLyTkIUB4v5aqDLzZyX4F206iunbja39eHPGMTjask&m=BYlh9c5fKpRb5lPBl-3vu6jiK5DzIUuFesDoqOxAzQc&s=XZGi1t_jnudyVh_bLXvjf4DqGgSuPZBVXOGAOPf7-6o&e=>www.facebook.com/BruinsAlliesforDuchenne<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.facebook.com_BruinsAlliesforDuchenne&d=DwMFaQ&c=UXmaowRpu5bLSLEQRunJ2z-YIUZuUoa9Rw_x449Hd_Y&r=GbLyTkIUB4v5aqDLzZyX4F206iunbja39eHPGMTjask&m=BYlh9c5fKpRb5lPBl-3vu6jiK5DzIUuFesDoqOxAzQc&s=XZGi1t_jnudyVh_bLXvjf4DqGgSuPZBVXOGAOPf7-6o&e=> Twitter: BruinAllies4Duchenne Instagram: #bruinalliesforduchenne P.S. to be removed from this email list please reply with 'remove email' ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Douine, E. D. <ED...@me...> - 2017-11-22 00:55:38
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The Bioinformatics IDP is pleased to announce the defense of her doctoral thesis by Aliz Rao "Analyses of Next-Generation Sequencing Data to Identify Genes Associated with Complex Neuropsychiatric Disorders" Nov 29th, 2017, Wednesday 2:00 p.m. 1357 Gonda Building Doctoral Committee: Stanley F. Nelson (Chair) Rita Cantor Eleazar Eskin Janet Sinsheimer Emilie DOUINE-BARTHELEMY, MS Study coordinator / SRA II Lab of Prof. Stanley Nelson Dept of Human Genetics 695 Charles E. Young Drive Gonda 5506 Los Angeles, CA 90095 Phone number: 310 267 2416 Fax: 310-206-5699 ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Arboleda, V. A. M. P. <VAr...@me...> - 2017-02-23 02:30:18
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Hi all, I’ll be giving lab meeting tomorrow. I’m going to present my 5- minute pitch for the NIH Early Independence award. I’m one of the finalists, and there are 22 finalists and 10 grants will be awarded. Its a short presentation but any feedback on how to make it better would be much appreciated! My pitch is only 5 minutes so likely to be a short meeting tomorrow :) NIH Early Independence award, DP5 (https://commonfund.nih.gov/earlyindependence/index) NIH Director's Early Independence Award Program<https://commonfund.nih.gov/earlyindependence/index> commonfund.nih.gov<http://commonfund.nih.gov> NIH Director's Early Independence Award Program with application information and announcements The pitch is scheduled to take place March 6th, 5 minute presentation + 15 minutes of questions. Criteria and guidelines. “Since the interview meeting is on a very tight schedule, please come prepared to provide concise, succinct, and most pertinent information within the allotted time. Remember that your task is to convince the Editorial Board that you deserve the EIA to launch a successful and independent research program. Your presentation and discussion should be focused on the following topics: 1. Evidence that your training and accomplishments demonstrate that you have the intellect, scientific creativity, drive and maturity to start an independent research career without the need for traditional post-doctoral training; 2. Evidence that the hosting institution is fully committed to your success with well-developed mentoring structure and faculty collaboration, protected research time, space, facility, support personnel, and an academic/research appointment; 3. Evidence that your proposed research project will exert a significant impact on the scientific field." ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Douine, E. D. <ED...@me...> - 2016-12-12 19:34:00
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Hi Everyone, There is some food in 5506, feel free to come by! Best Emilie DOUINE-BARTHELEMY, MS Study coordinator / SRA II Lab of Prof. Stanley Nelson Dept of Human Genetics 695 Charles E. Young Drive Gonda 5506 Los Angeles, CA 90095 Phone number: 310 267 2416 Fax: 310-794-5446 ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Douine, E. D. <ED...@me...> - 2016-09-20 20:17:58
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Hi everyone, There is free food in 5506 Gonda. Best Emilie DOUINE-BARTHELEMY, MS Study coordinator / SRA II Lab of Prof. Stanley Nelson Dept of Human Genetics 695 Charles E. Young Drive Gonda 5506 Los Angeles, CA 90095 Phone number: 310 267 2416 Fax: 310-794-5446 ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Aliz R. <ali...@gm...> - 2016-08-18 21:21:33
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Hello all, In case you were planning to go to ASHG, today is the early registration deadline. Don't forget to sign up today to save on registration costs. Best, Aliz |
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From: Douine, E. D. <ED...@me...> - 2016-07-28 20:46:47
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Hi everyone, Does anyone need this kind of boxes to be ordered? http://www.dnagenotek.com/US/products/SO1.html. DNA Genotek | DNA Kit | Mailing Accessories<http://www.dnagenotek.com/US/products/SO1.html.> www.dnagenotek.com Complete mailing accessories for DNA collection kits from DNA Genotek. It seems that Janeen received some of them (should be in the lab...). Thanks Best Emilie DOUINE-BARTHELEMY, MS Study coordinator / SRA II Lab of Prof. Stanley Nelson Dept of Human Genetics 695 Charles E. Young Drive Gonda 5506 Los Angeles, CA 90095 Phone number: 310 267 2416 Fax: 310-794-5446 ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Douine, E. D. <ED...@me...> - 2016-07-21 23:06:25
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Hi everyone, We will begin shortly a common labmeeting Nelson's/Miceli's labs. Consequently, please complete the doodle by the end of the week to pick up the best time for everyone to attend. http://doodle.com/poll/pa28pwrkg8fqrtef [http://doodle.com/graphics/static/facebookSharingThumbnail.png]<http://doodle.com/poll/pa28pwrkg8fqrtef> Doodle: Labmeeting<http://doodle.com/poll/pa28pwrkg8fqrtef> doodle.com Doodle radically simplifies the process of scheduling events, meetings, appointments, etc. Herding cats gets 2x faster with Doodle. For free! Thank you! Best Emilie DOUINE-BARTHELEMY, MS Study coordinator / SRA II Lab of Prof. Stanley Nelson Dept of Human Genetics 695 Charles E. Young Drive Gonda 5506 Los Angeles, CA 90095 Phone number: 310 267 2416 Fax: 310-794-5446 ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Wang, R. T. <RT...@me...> - 2016-07-21 01:11:34
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Just a correction it's the -80 in the hallway on the 5th floor. Basement -80 freezers will be cleaned out next. From: Douine, Emilie D. [mailto:ED...@me...] Sent: Wednesday, July 20, 2016 2:45 PM To: Nelson Lab <nel...@li...> Subject: [Nelsonlab-main] -180°C cleaning Hi everyone, We would like to clean the -180°C so can you please put your name on your samples. Discard what can be. Decide if samples should be send back to collaborators. What is not labeled by August 5th will be discarded. Thank you! Emilie DOUINE-BARTHELEMY, MS Study coordinator / SRA II Lab of Prof. Stanley Nelson Dept of Human Genetics 695 Charles E. Young Drive Gonda 5506 Los Angeles, CA 90095 Phone number: 310 267 2416 Fax: 310-794-5446 ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: Douine, E. D. <ED...@me...> - 2016-07-20 23:19:26
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Hi everyone, We would like to clean the -180°C so can you please put your name on your samples. Discard what can be. Decide if samples should be send back to collaborators. What is not labeled by August 5th will be discarded. Thank you! Emilie DOUINE-BARTHELEMY, MS Study coordinator / SRA II Lab of Prof. Stanley Nelson Dept of Human Genetics 695 Charles E. Young Drive Gonda 5506 Los Angeles, CA 90095 Phone number: 310 267 2416 Fax: 310-794-5446 ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: ASCIA E. <as...@uc...> - 2016-07-05 15:12:05
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Thanks guys, and yeah I see now my problem is with my script's tmp directory. Thank you!! On Tue, Jul 5, 2016 at 6:46 AM, Bret Harry <ja...@ga...> wrote: > bret@rocks60:~$ lfs > lfs > df > UUID 1K-blocks Used Available Use% Mounted on > lfs1-MDT0000_UUID 638706364 29464516 566653800 5% > /scratch1[MDT:0] > lfs1-OST0000_UUID 17435432924 16309945168 951076132 94% > /scratch1[OST:0] > lfs1-OST0001_UUID 17435432924 16310121996 950899180 94% > /scratch1[OST:1] > lfs1-OST0002_UUID 17435432924 16309938332 951083868 94% > /scratch1[OST:2] > lfs1-OST0003_UUID 17435432924 16309918848 951103288 94% > /scratch1[OST:3] > lfs1-OST0004_UUID 17576015348 16310283540 1089913788 94% > /scratch1[OST:4] > lfs1-OST0005_UUID 17576015348 16309653096 1090545252 94% > /scratch1[OST:5] > lfs1-OST0006_UUID 17576015348 16310048704 1090149648 94% > /scratch1[OST:6] > lfs1-OST0007_UUID 17576015348 16310834604 1089363748 94% > /scratch1[OST:7] > lfs1-OST0008_UUID 17576015348 16309712836 1090485512 94% > /scratch1[OST:8] > lfs1-OST0009_UUID 17576015348 16310488272 1089709984 94% > /scratch1[OST:9] > > filesystem summary: 175197823784 163100945396 10344330400 94% /scratch1 > > Hope this helps ! > > -bret > > On Tue, Jul 05, 2016 at 12:22:12AM -0700, ASCIA ESKIN wrote: > > Hi, > > Is anyone having trouble with scratch1? > > My jobs are failing with this error "Exception in thread "main" > > net.sf.samtools.util.RuntimeIOException: java.io.IOException: No space > > left on device" > > How full is scratch1? Is there a way we can temporarily move some > > data of past users? > > Thanks! > > Ascia > > > > ------------------------------------------------------------------------------ > Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San > Francisco, CA to explore cutting-edge tech and listen to tech luminaries > present their vision of the future. This family event has something for > everyone, including kids. Get more information and register today. > http://sdm.link/attshape > _______________________________________________ > Nelsonlab-main mailing list > Nel...@li... > https://lists.sourceforge.net/lists/listinfo/nelsonlab-main > > |
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From: Bret H. <ja...@ga...> - 2016-07-05 13:47:04
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bret@rocks60:~$ lfs lfs > df UUID 1K-blocks Used Available Use% Mounted on lfs1-MDT0000_UUID 638706364 29464516 566653800 5% /scratch1[MDT:0] lfs1-OST0000_UUID 17435432924 16309945168 951076132 94% /scratch1[OST:0] lfs1-OST0001_UUID 17435432924 16310121996 950899180 94% /scratch1[OST:1] lfs1-OST0002_UUID 17435432924 16309938332 951083868 94% /scratch1[OST:2] lfs1-OST0003_UUID 17435432924 16309918848 951103288 94% /scratch1[OST:3] lfs1-OST0004_UUID 17576015348 16310283540 1089913788 94% /scratch1[OST:4] lfs1-OST0005_UUID 17576015348 16309653096 1090545252 94% /scratch1[OST:5] lfs1-OST0006_UUID 17576015348 16310048704 1090149648 94% /scratch1[OST:6] lfs1-OST0007_UUID 17576015348 16310834604 1089363748 94% /scratch1[OST:7] lfs1-OST0008_UUID 17576015348 16309712836 1090485512 94% /scratch1[OST:8] lfs1-OST0009_UUID 17576015348 16310488272 1089709984 94% /scratch1[OST:9] filesystem summary: 175197823784 163100945396 10344330400 94% /scratch1 Hope this helps ! -bret On Tue, Jul 05, 2016 at 12:22:12AM -0700, ASCIA ESKIN wrote: > Hi, > Is anyone having trouble with scratch1? > My jobs are failing with this error "Exception in thread "main" > net.sf.samtools.util.RuntimeIOException: java.io.IOException: No space > left on device" > How full is scratch1? Is there a way we can temporarily move some > data of past users? > Thanks! > Ascia |
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From: Wang, R. T. <RT...@me...> - 2016-07-05 07:57:50
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Scratch1 is working fine for me. Your error may be due to your specified tmp directory filling up. If you are doing many things simultaneously you are probably filling up the default tmp dir. Are you specifying -Djava.io.tmpdir to something? You can create a temp dir anywhere and set that parameter. ________________________________ From: ASCIA ESKIN [as...@uc...] Sent: Tuesday, July 05, 2016 12:22 AM To: Nelson Lab; Jesus Mendoza Subject: [Nelsonlab-main] scratch1 full? Hi, Is anyone having trouble with scratch1? My jobs are failing with this error "Exception in thread "main" net.sf.samtools.util.RuntimeIOException: java.io.IOException: No space left on device" How full is scratch1? Is there a way we can temporarily move some data of past users? Thanks! Ascia ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: ASCIA E. <as...@uc...> - 2016-07-05 07:22:23
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Hi, Is anyone having trouble with scratch1? My jobs are failing with this error "Exception in thread "main" net.sf.samtools.util.RuntimeIOException: java.io.IOException: No space left on device" How full is scratch1? Is there a way we can temporarily move some data of past users? Thanks! Ascia |
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From: Bret H. <ja...@ga...> - 2016-06-28 06:45:06
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I think there are two things going on. One is that /scratch1 does a data integrity test every Monday early in the morning. The test takes several hours and it would not be a good idea to disable it completely, although it could be run at a different time or even run as infrequently as once per month. Two, the used storage capacity on /scratch1 is at 97% which typically exacerbates filesystem latency issues like those that you've described. This can only be alleviated by reducing the used storage capacity. This graph shows a summary of usage for /scratch1: http://genome.ucla.edu/~bret/mybs/disk_usage_user_scratch_today.png The values in the legend show the one year averages, not the current usage. The scale of y-axis is in terabytes. As far as I know, /scratch1 is not backed up which could mean data-loss in the case of more serious problems. Hope this helps, -bret On Mon, Jun 27, 2016 at 04:09:23PM +0000, Wang, Richard T. wrote: > Hi Hane > > I cannot get to scratch1 and cannot "ls" that file system. Home directories were not affected so those files are okay as of 9am est. I think the scratch1 file system is having serious issues. > > Richard > > > On Jun 27, 2016, at 12:04 PM, HANE LEE <hanelee@g.ucla.edu> wrote: > > > > Is anybody else having problems with the server? > > It was working earlier this morning but it started erroring out when I was trying to transfer small files from my local computer and then it wouldn't allow me 'vi' and now it's not letting me 'ls'... > > > > > > ------------------------------------------------------------------------------ > > Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San > > Francisco, CA to explore cutting-edge tech and listen to tech luminaries > > present their vision of the future. This family event has something for > > everyone, including kids. Get more information and register today. > > http://sdm.link/attshape > > _______________________________________________ > > Nelsonlab-main mailing list > > Nel...@li... > > https://lists.sourceforge.net/lists/listinfo/nelsonlab-main > > ________________________________ > > UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. > > ------------------------------------------------------------------------------ > Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San > Francisco, CA to explore cutting-edge tech and listen to tech luminaries > present their vision of the future. This family event has something for > everyone, including kids. Get more information and register today. > http://sdm.link/attshape > _______________________________________________ > Nelsonlab-main mailing list > Nel...@li... > https://lists.sourceforge.net/lists/listinfo/nelsonlab-main |
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From: Wang, R. T. <RT...@me...> - 2016-06-28 06:44:25
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Thanks Bret. I did not know about the integrity test. Reducing data store is the ongoing project of the summer ... Richard > On Jun 27, 2016, at 11:26 PM, Bret Harry <ja...@ga...> wrote: > > I think there are two things going on. One is that /scratch1 does a data integrity test every Monday early in the morning. The test takes several hours and it would not be a good idea to disable it completely, although it could be run at a different time or even run as infrequently as once per month. Two, the used storage capacity on /scratch1 is at 97% which typically exacerbates filesystem latency issues like those that you've described. This can only be alleviated by reducing the used storage capacity. This graph shows a summary of usage for /scratch1: > > http://genome.ucla.edu/~bret/mybs/disk_usage_user_scratch_today.png > > The values in the legend show the one year averages, not the current usage. The scale of y-axis is in terabytes. As far as I know, /scratch1 is not backed up which could mean data-loss in the case of more serious problems. > > Hope this helps, > > -bret > >> On Mon, Jun 27, 2016 at 04:09:23PM +0000, Wang, Richard T. wrote: >> Hi Hane >> >> I cannot get to scratch1 and cannot "ls" that file system. Home directories were not affected so those files are okay as of 9am est. I think the scratch1 file system is having serious issues. >> >> Richard >> >>> On Jun 27, 2016, at 12:04 PM, HANE LEE <hanelee@g.ucla.edu> wrote: >>> >>> Is anybody else having problems with the server? >>> It was working earlier this morning but it started erroring out when I was trying to transfer small files from my local computer and then it wouldn't allow me 'vi' and now it's not letting me 'ls'... >>> >>> >>> ------------------------------------------------------------------------------ >>> Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San >>> Francisco, CA to explore cutting-edge tech and listen to tech luminaries >>> present their vision of the future. This family event has something for >>> everyone, including kids. Get more information and register today. >>> http://sdm.link/attshape >>> _______________________________________________ >>> Nelsonlab-main mailing list >>> Nel...@li... >>> https://lists.sourceforge.net/lists/listinfo/nelsonlab-main >> >> ________________________________ >> >> UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. >> >> ------------------------------------------------------------------------------ >> Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San >> Francisco, CA to explore cutting-edge tech and listen to tech luminaries >> present their vision of the future. This family event has something for >> everyone, including kids. Get more information and register today. >> http://sdm.link/attshape >> _______________________________________________ >> Nelsonlab-main mailing list >> Nel...@li... >> https://lists.sourceforge.net/lists/listinfo/nelsonlab-main |
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From: Aliz R. <ali...@gm...> - 2016-06-27 18:34:17
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I can access it fine, as well. - Aliz On Mon, Jun 27, 2016 at 11:07 AM, Chang, Vivian M.D. <VC...@me... > wrote: > I seem to be able to access scratch1 normally so far... > > Vivian > > > -----Original Message----- > From: Wang, Richard T. [mailto:RT...@me...] > Sent: Monday, June 27, 2016 9:09 AM > To: HANE LEE > Cc: Nelson Lab; Jesus Mendoza > Subject: Re: [Nelsonlab-main] server > > Hi Hane > > I cannot get to scratch1 and cannot "ls" that file system. Home > directories were not affected so those files are okay as of 9am est. I > think the scratch1 file system is having serious issues. > > Richard > > > On Jun 27, 2016, at 12:04 PM, HANE LEE <hanelee@g.ucla.edu> wrote: > > > > Is anybody else having problems with the server? > > It was working earlier this morning but it started erroring out when I > was trying to transfer small files from my local computer and then it > wouldn't allow me 'vi' and now it's not letting me 'ls'... > > > > > > ---------------------------------------------------------------------- > > -------- Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T > > Park in San Francisco, CA to explore cutting-edge tech and listen to > > tech luminaries present their vision of the future. This family event > > has something for everyone, including kids. Get more information and > > register today. > > http://sdm.link/attshape > > _______________________________________________ > > Nelsonlab-main mailing list > > Nel...@li... > > https://lists.sourceforge.net/lists/listinfo/nelsonlab-main > > ________________________________ > > UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) > is only intended for the use of the person or entity to which it is > addressed, and may contain information that is privileged and confidential. > You, the recipient, are obligated to maintain it in a safe, secure and > confidential manner. Unauthorized redisclosure or failure to maintain > confidentiality may subject you to federal and state penalties. If you are > not the intended recipient, please immediately notify us by return email, > and delete this message from your computer. > > > ------------------------------------------------------------------------------ > Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San > Francisco, CA to explore cutting-edge tech and listen to tech luminaries > present their vision of the future. This family event has something for > everyone, including kids. Get more information and register today. > http://sdm.link/attshape > _______________________________________________ > Nelsonlab-main mailing list > Nel...@li... > https://lists.sourceforge.net/lists/listinfo/nelsonlab-main > > > ------------------------------------------------------------------------------ > Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San > Francisco, CA to explore cutting-edge tech and listen to tech luminaries > present their vision of the future. This family event has something for > everyone, including kids. Get more information and register today. > http://sdm.link/attshape > _______________________________________________ > Nelsonlab-main mailing list > Nel...@li... > https://lists.sourceforge.net/lists/listinfo/nelsonlab-main > |
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From: Chang, V. M.D. <VC...@me...> - 2016-06-27 18:07:52
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I seem to be able to access scratch1 normally so far... Vivian -----Original Message----- From: Wang, Richard T. [mailto:RT...@me...] Sent: Monday, June 27, 2016 9:09 AM To: HANE LEE Cc: Nelson Lab; Jesus Mendoza Subject: Re: [Nelsonlab-main] server Hi Hane I cannot get to scratch1 and cannot "ls" that file system. Home directories were not affected so those files are okay as of 9am est. I think the scratch1 file system is having serious issues. Richard > On Jun 27, 2016, at 12:04 PM, HANE LEE <hanelee@g.ucla.edu> wrote: > > Is anybody else having problems with the server? > It was working earlier this morning but it started erroring out when I was trying to transfer small files from my local computer and then it wouldn't allow me 'vi' and now it's not letting me 'ls'... > > > ---------------------------------------------------------------------- > -------- Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T > Park in San Francisco, CA to explore cutting-edge tech and listen to > tech luminaries present their vision of the future. This family event > has something for everyone, including kids. Get more information and > register today. > http://sdm.link/attshape > _______________________________________________ > Nelsonlab-main mailing list > Nel...@li... > https://lists.sourceforge.net/lists/listinfo/nelsonlab-main ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. ------------------------------------------------------------------------------ Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San Francisco, CA to explore cutting-edge tech and listen to tech luminaries present their vision of the future. This family event has something for everyone, including kids. Get more information and register today. http://sdm.link/attshape _______________________________________________ Nelsonlab-main mailing list Nel...@li... https://lists.sourceforge.net/lists/listinfo/nelsonlab-main |
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From: Wang, R. T. <RT...@me...> - 2016-06-27 16:09:35
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Hi Hane I cannot get to scratch1 and cannot "ls" that file system. Home directories were not affected so those files are okay as of 9am est. I think the scratch1 file system is having serious issues. Richard > On Jun 27, 2016, at 12:04 PM, HANE LEE <hanelee@g.ucla.edu> wrote: > > Is anybody else having problems with the server? > It was working earlier this morning but it started erroring out when I was trying to transfer small files from my local computer and then it wouldn't allow me 'vi' and now it's not letting me 'ls'... > > > ------------------------------------------------------------------------------ > Attend Shape: An AT&T Tech Expo July 15-16. Meet us at AT&T Park in San > Francisco, CA to explore cutting-edge tech and listen to tech luminaries > present their vision of the future. This family event has something for > everyone, including kids. Get more information and register today. > http://sdm.link/attshape > _______________________________________________ > Nelsonlab-main mailing list > Nel...@li... > https://lists.sourceforge.net/lists/listinfo/nelsonlab-main ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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From: HANE L. <hanelee@g.ucla.edu> - 2016-06-27 16:04:21
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Is anybody else having problems with the server? It was working earlier this morning but it started erroring out when I was trying to transfer small files from my local computer and then it wouldn't allow me 'vi' and now it's not letting me 'ls'... |
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From: HANE L. <hanelee@g.ucla.edu> - 2016-06-27 15:55:17
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transfer is still a little slow but everything seems to be working now... On Mon, Jun 27, 2016 at 8:39 AM, HANE LEE <hanelee@g.ucla.edu> wrote: > Is anybody else having problems with the server? > It was working earlier this morning but it started erroring out when I was > trying to transfer small files from my local computer and then it wouldn't > allow me 'vi' and now it's not letting me 'ls'... > > > |
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From: Douine, E. D. <ED...@me...> - 2016-06-17 17:17:11
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HI All, Just a reminder for the lunch party today, in 6th floor conference room at noon. see you there! Emilie DOUINE-BARTHELEMY, MS Study coordinator / SRA II Lab of Prof. Stanley Nelson Dept of Human Genetics 695 Charles E. Young Drive Gonda 5506 Los Angeles, CA 90095 Phone number: 310 267 2416 Fax: 310-794-5446 ________________________________________ De : Stanley Nelson [sn...@uc...] Envoyé : mardi 14 juin 2016 11:22 À : Nelson Lab Objet : [Nelsonlab-main] Janeen Retirement Party, Friday noon, 6th floor conf room. HI All, As many of you are aware Janeen has decided to RETIRE! In celebration of all of her work in the Nelson lab over many years, we will have a on this Friday. Her last day is the end of June, so please join me in thanking Janeen for her years of service, and wishing her well in this next stage of her life. Best, Stan ------------------------------------------------------------------------------ What NetFlow Analyzer can do for you? Monitors network bandwidth and traffic patterns at an interface-level. Reveals which users, apps, and protocols are consuming the most bandwidth. Provides multi-vendor support for NetFlow, J-Flow, sFlow and other flows. Make informed decisions using capacity planning reports. http://pubads.g.doubleclick.net/gampad/clk?id=1444514421&iu=/41014381 _______________________________________________ Nelsonlab-main mailing list Nel...@li... https://lists.sourceforge.net/lists/listinfo/nelsonlab-main ________________________________ UCLA HEALTH SCIENCES IMPORTANT WARNING: This email (and any attachments) is only intended for the use of the person or entity to which it is addressed, and may contain information that is privileged and confidential. You, the recipient, are obligated to maintain it in a safe, secure and confidential manner. Unauthorized redisclosure or failure to maintain confidentiality may subject you to federal and state penalties. If you are not the intended recipient, please immediately notify us by return email, and delete this message from your computer. |
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