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From: Brian O'C. <bri...@gm...> - 2010-03-26 02:27:25
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Hey Guys, I updated the SeqWare Pipeline workflow documentation today for version 0.6.2.1, specifically for the variant DB workflow and the provisioning of query engine databases. See: https://secure.genome.ucla.edu/index.php/Sequence_Analysis_Workflow_HOWTO for the updated information. Keep in mind there's a little more work for the database provisioning steps to work, I need to get Bret and/or Jordan's help with that once I cleanup some old DBs on compute-2-7. I included a TODO list in the wiki entry for Bret and Jordan: https://secure.genome.ucla.edu/index.php/Sequence_Analysis_Workflow_HOWTO#Provisioning_database_to_SeqWare_QueryEngine The important take home point for "power users" (Kevin, Hane, Michael Clark, Sam, etc) that want to run workflows for alignment, variant calling, and annotation is to please use the current tagged version (0.6.2.1). This way the directions in the wiki and the tools parameters will match up. As new version of SeqWare become available Jordan will coordinate the software release and documentation on this wiki page and send out an email letting people know it's been updated. The next item on my plate is finishing the updates to the LIMS. I'll send around links to docs in the wiki and the updated LIMS URL when it's available (first week of April I hope). At that point I want to get everyone's help moving the unstructured sample metadata in the wiki into the LIMS SRA datamodel. This will make it much easier to track samples and what we've done to them computationally. Hope this helps! --Brian |