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Re: [Nelsonlab-analysis] BAMs for Variant Calling
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From: Brian O'C. <bri...@gm...> - 2010-02-22 08:55:50
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Thanks Jordan! --Brian On Mon, Feb 22, 2010 at 12:51 AM, Jordan Mendler <jme...@uc...> wrote: > Kevin, > > Pileups from our pipeline are available from here. We are still debugging, > so please let me know how the data looks. > > /home/seqware/datasets/experiments/1519/U08/pileup > > Jordan > > > On Sun, Feb 21, 2010 at 8:35 PM, Jordan Mendler <jme...@uc...> wrote: >> >> Jobs are running >> >> >> -------------------- >> Note to self: >> >> bin/pegasus-run.sh workflows/HumanGenomicVariant.ftl >> config/HumanGenomicVariant.ini /tmp/variantnew.dax >> --experiment_name=1518_U08_neck_tumor >> --experiment_bam_inputs=1519_whole_genome_bfast_alignment/nhomer_bfast_alignment_reports-2010-2-02/bam/bfast.susan_20091217_2_50mer_only.bam >> --experiment_directory=experiments/1519/U08 >> >> bin/pegasus-run.sh workflows/HumanGenomicVariant.ftl >> config/HumanGenomicVariant.ini /tmp/variantnew.dax >> --experiment_name=1518_normal_blood >> --experiment_bam_inputs=1519_whole_genome_bfast_alignment/nhomer_bfast_alignment_reports-2010-2-02/bam/bfast.tomoe_20091222_2_50mer_only.bam >> --experiment_directory=experiments/1519/U08 > |
