ncl-users — notifications of updates and significant bugs

[Andre J. A. <and...@go...>]

Dear all, 

I encountered an extremely weird error during compilation with or
against libncl. 

It only occurred with gcc 4.7.0 and on a specific machine (x86_64,
Linux). Basically I wanted to link statically against libncl.a. Also I
tried to compile it myself and compiled it into a static library that is
then linked to the final executable. 

In any case, during linking, the error below was thrown (also tried
different versions of ranlib). 

For now, I just inlined the respective methods (and moved these to the
respective *.h file). This probably does not make much sense, but seems
to solve the error.

So I just wanted to leave a message, in case somebody at some point also
struggles with this...


> libbayes.a(nclConfigReader.o):(.rodata._ZTV18NxsCharactersBlock[_ZTV18NxsCharactersBlock]+0x1e8): undefined reference to `non-virtual thunk to NxsCharactersBlock::GetMaxIndex() const'
> libbayes.a(nclConfigReader.o):(.rodata._ZTV18NxsCharactersBlock[_ZTV18NxsCharactersBlock]+0x1f8): undefined reference to `non-virtual thunk to NxsCharactersBlock::GetIndicesForLabel(std::string const&, std::set<unsigned int, std::less<unsigned int>, std::allocator<unsigned int> >*) const'
> libbayes.a(nclConfigReader.o):(.rodata._ZTV18NxsCharactersBlock[_ZTV18NxsCharactersBlock]+0x208): undefined reference to `non-virtual thunk to NxsCharactersBlock::AddNewIndexSet(std::string const&, std::set<unsigned int, std::less<unsigned int>, std::allocator<unsigned int> > const&)'
> libbayes.a(nclConfigReader.o):(.rodata._ZTV18NxsCharactersBlock[_ZTV18NxsCharactersBlock]+0x210): undefined reference to `non-virtual thunk to NxsCharactersBlock::AddNewPartition(std::string const&, std::list<std::pair<std::string, std::set<unsigned int, std::less<unsigned int>, std::allocator<unsigned int> > >, std::allocator<std::pair<std::string, std::set<unsigned int, std::less<unsigned int>, std::allocator<unsigned int> > > > > const&)'   

-- 
Best regards,
Andre J. Aberer

M.Sc. (Bioinformatics)
Scientific Computing Group

Heidelberg Institute for Theoretical Studies (HITS gGmbH)
Schloss-Wolfsbrunnenweg 35
D-69118 Heidelberg

Tel.:	+49 6221 533 264
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Email:  andre.aberer <at> h-its <dot> org
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