Re: [MUMmer-help] DNAdiff SNP output

[Adam P. <aph...@gm...>]

Hi Poonam,
There is a README in the install directory that gives a description of the
column headers for the show-snps output (the .snps suffix) and the
show-diff output (the *diff suffixes). In the docs/ directory, there is a
dnadiff.README file that gives some description of the .report file.

Best,
-Adam


On Wed, Sep 28, 2022 at 3:22 PM Poonam Chitale <pc...@gs...>
wrote:

> Hi,
>
> I am interested in using dnadiff to compare 2 highly similar strains of
> Mycobacterium tuberculosis.
> I was hoping someone could help me better understand the column
> descriptions/headers of the out.snp file generated by DNAdiff?
>
> Please see attached for an example file that was generated when I ran
> DNAdiff across 2 samples.
>
> Any help would be greatly appreciated!
>
> Thanks,
> Poonam
>
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