Re: [MUMmer-help] Error running run-mummer1 and exact tandems

[Adam P. <aph...@gm...>]

Hi Adriana,
I'm not familiar with the conda package, but it looks like it failed to
find the right shell and so left it blank. That run-mummer1 script is very
old and is a C-shell script. '#!/bin/csh -f' should work if you have it on
your system.

Best,
-Adam


On Tue, Jun 23, 2020 at 12:10 PM adriana gallego <
adr...@gm...> wrote:

>
> Cordial greeting. Thank you so much for developing MuMmer, this is an
> excellent tool.
>
> Currently I'm facing an issue which has not been discussed yet. When I run
> run-mummer1 or exact-tandems, the next error comes out
>
> bash: /home/adriana/miniconda3/envs/mummer_env/bin/run-mummer1: -f bad
> interpreter: No such file or directory
>
> I think this is related with the first line of the run-mummer1 and exact
> tandems files which says
>
> #! -f
>
> I tested #!/usr/bin/perl, but it did not work
>
> Thanks for the help
>
> --
> *Adriana María Gallego Rúa*
> *Investigadora **Laboratorio de Biotecnología*
> *Universidad de Antioquia*
>
> *ColombiaMedellín-2020*
> _______________________________________________
> MUMmer-help mailing list
> MUM...@li...
> https://lists.sourceforge.net/lists/listinfo/mummer-help
>