[MUMmer-help] Dear mummer group:About mummerplot questions (Clarence Hsiang)

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Dear mummer group:

Good evening.

Japanese apricot (Prunus mume) is our research specie, and we  
conducted 10x genomics technique making a new genome by using genomic  
DNA from Japanese cultivar.
Furthermore, we would like to compare the genomic difference between  
publised Prunus mume genome (chinese cultivar) with the new  
10xgenomics Prunus mume genome.

But the result of mummerplot showed very strange from the demo picture  
from the mummer tutorial website.

The steps we used as below:
nucmer -p 191212mummer-10xNanko_oldPmref  
/data/share/genome/pmum/old-with/annotation-until2018/P.mume.genome.fa  
/data/public/hsiang/10x_sequencing/190812-test1-result/output_0817_prefix.1.fasta
mummerplot 191212mummer-10xNanko_oldPmref.delta --postscript
And the output files as below:
out.ps
out.rplot
out.gp
out.fplot
191212mummer-10xNanko_oldPmref.delta

FILES LINK: https://drive.google.com/open?id=1wH1Xpt8r4MiZ050UPWWu0mUkeJFpZEqH


Could you give me some solutions and suggestions?

Thank you very much

Best wishes,


Clarence Hsiang