Re: [MUMmer-help] Could not find any alignments while using "show-aligns"

[Adam P. <aph...@gm...>]

Hello,
Try running show-coords first. The last two columns will list the reference
and query sequence IDs. If there is no line in the show-coords output
listing an alignment between 30 and 33, then there are no alignments to
report.

Best,
-Adam


On Fri, Oct 2, 2015 at 6:00 AM, Rameez Mj <ram...@gm...> wrote:

> I am trying to align one draft genome contigs to another draft genome
> contigs.I generated the delta file and proceeded for show-aligns command
> like this
>
> "show-aligns ref_qry.delta -r 30 33 > ref_qry.aligns" where 30 and 33 are
> the names I wish to see in the alignment for both my draft sequences
> respectively. But this commands shows "ERROR: Could not find any alignments
> for 30 and 33". I am not able to resolve this,can anyone help me with
> it.Thanks in advance.
>
>
>
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