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From: Adam P. <aph...@gm...> - 2015-10-06 19:49:52
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Hello, Try running show-coords first. The last two columns will list the reference and query sequence IDs. If there is no line in the show-coords output listing an alignment between 30 and 33, then there are no alignments to report. Best, -Adam On Fri, Oct 2, 2015 at 6:00 AM, Rameez Mj <ram...@gm...> wrote: > I am trying to align one draft genome contigs to another draft genome > contigs.I generated the delta file and proceeded for show-aligns command > like this > > "show-aligns ref_qry.delta -r 30 33 > ref_qry.aligns" where 30 and 33 are > the names I wish to see in the alignment for both my draft sequences > respectively. But this commands shows "ERROR: Could not find any alignments > for 30 and 33". I am not able to resolve this,can anyone help me with > it.Thanks in advance. > > > > ------------------------------------------------------------------------------ > > _______________________________________________ > MUMmer-help mailing list > MUM...@li... > https://lists.sourceforge.net/lists/listinfo/mummer-help > > |