[MUMmer-help] mummer issues

[Chunda F. <cf...@ua...>]

Hello experts,

I am using Mummer3.23 to compare the draft genome sequences of two races of the plant pathogen I am working on.  The dot plots generated by mummerplot from my sequences are weird. Can anyone tell me how to fix the problem? Also, I occasionally encountered issues listed below:

1.       tail: cannot open `+3' for reading: No such file or directory

2.       ERROR: Could not parse input from 'Query File' (but other functions went through with the same query file)

3.       WARNING: Could not parse ref.fasta (but other functions went through with the same reference file)

4.       gnuplot: unable to open display ''  gnuplot: X11 aborted. WARNING: Unable to query clipboard with xclip  -- INTERACTIVE MODE --

Any help is appreciated. Thanks a lot.


Feng