Re: [MUMmer-help] Problem with mummerplot

[Adam P. <aph...@gm...>]

This is probably because you don't have a running X server. Mummerplot, by
default, will try and launch an interactive gnuplot window which requires
X. If you don't have X, you can generate a static plot with mummerplot '-t
png' which will generate a png image. (If you are ssh'ing to a server, and
that's what is confusing things, make sure to ssh with the -X option to
forward X)

Best,
-Adam


On Tue, May 26, 2015 at 7:57 PM, Guannan <wan...@gm...> wrote:

> Hello,
>
> I have been using Amoscmp-shortreads for a reference-guided assembly, in
> which nucmer is used.
> The command in that pipeline is : /usr/local/bin/nucmer --maxmatch
> --prefix=my_file -l 20 -c 20 my_file.1con my_file.seq.After this, a 71G
> delta file is generated.
> But when I wanted to visualize this delta file with mummerplot, it shown
> 'killed' without any error message. Here is the command I used: mummerplot
> my_file.delta.
> What is the problem here and how should I solve it?
> Thank you.
>
> Nan
>
>
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