Re: [MUMmer-help] nucmer error

[Adam P. <aph...@gm...>]

Hi Chris,
Have seen this error on the MUMmer list before. Here was the solution:

"Figured this one out - had a bracket in my folder name!"

Likely some sort of filename / environment issue.

-Adam


On Mon, Feb 23, 2015 at 7:17 AM, Wymant, Chris <c.w...@im...>
wrote:

>  Dear MUMmer help,
>
> >From a clean install of MUMmer, running
> $ nucmer --maxmatch test1.fa test2.fa
> gives the output
> 1: PREPARING DATA
> sh: 1: Syntax error: "(" unexpected
> ERROR: prenuc returned non-zero
> regardless of what is in the fasta files; for example just
> >MySequence
> ACTG
> still gives the error. Changing the --maxmatch option does not help.
> Please advise.
>
> Thanks,
> Chris Wymant
>
>
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