[MUMmer-help] delta-filter parameters

[Hélène C. <hel...@to...>]

Hello

I used nucmer to align pair of closed bacteria genomes.
I have a question regarding delta-filter parameters:
are the "-r -q" and "-g" options equivalent ?
My undersanding is that the "-g" option assumes collinear
genomes and do not allow for inversion and translocation,
while the "-r -q" option allow one to one mapping with possible
"local" inversions.
Is that correct ?

Thanks in advance

Helene